#This file specifies visual mappings for Cytoscape and has been automatically generated. # WARNING: any changes you make to this file while Cytoscape is running may be overwritten. # Any changes may make these visual mappings unreadable. # Please make sure you know what you are doing before modifying this file by hand. # #Wed Sep 27 13:12:09 GMT-06:00 2006 edgeAppearanceCalculator.FCMStyle.defaultEdgeColor=0,0,0 edgeAppearanceCalculator.FCMStyle.defaultEdgeFont=Default,plain,10 edgeAppearanceCalculator.FCMStyle.defaultEdgeLabel= edgeAppearanceCalculator.FCMStyle.defaultEdgeLineType=LINE_1 edgeAppearanceCalculator.FCMStyle.defaultEdgeSourceArrow=NONE edgeAppearanceCalculator.FCMStyle.defaultEdgeTargetArrow=BLACK_DELTA edgeAppearanceCalculator.FCMStyle.defaultEdgeToolTip= edgeAppearanceCalculator.FCMStyle.edgeColorCalculator=FCM EdgeType Colorer edgeAppearanceCalculator.FCMStyle.edgeFontFaceCalculator=null edgeAppearanceCalculator.FCMStyle.edgeFontSizeCalculator=null edgeAppearanceCalculator.FCMStyle.edgeLabelCalculator=null edgeAppearanceCalculator.FCMStyle.edgeLineTypeCalculator=FCM Edge Style (certainty) edgeAppearanceCalculator.FCMStyle.edgeSourceArrowCalculator=null edgeAppearanceCalculator.FCMStyle.edgeTargetArrowCalculator=null edgeAppearanceCalculator.FCMStyle.edgeToolTipCalculator=null edgeAppearanceCalculator.Sample1.defaultEdgeColor=0,0,0 edgeAppearanceCalculator.Sample1.defaultEdgeFont=Default,plain,10 edgeAppearanceCalculator.Sample1.defaultEdgeLabel= edgeAppearanceCalculator.Sample1.defaultEdgeLineType=LINE_1 edgeAppearanceCalculator.Sample1.defaultEdgeSourceArrow=NONE edgeAppearanceCalculator.Sample1.defaultEdgeTargetArrow=NONE edgeAppearanceCalculator.Sample1.defaultEdgeToolTip= edgeAppearanceCalculator.Sample1.edgeColorCalculator=BasicDiscrete edgeAppearanceCalculator.Sample1.edgeFontFaceCalculator=null edgeAppearanceCalculator.Sample1.edgeFontSizeCalculator=null edgeAppearanceCalculator.Sample1.edgeLabelCalculator=EdgeLabel edgeAppearanceCalculator.Sample1.edgeLineTypeCalculator=InteractionType edgeAppearanceCalculator.Sample1.edgeSourceArrowCalculator=null edgeAppearanceCalculator.Sample1.edgeTargetArrowCalculator=null edgeAppearanceCalculator.Sample1.edgeToolTipCalculator=null edgeAppearanceCalculator.Sample2.defaultEdgeColor=0,0,0 edgeAppearanceCalculator.Sample2.defaultEdgeFont=Default,plain,10 edgeAppearanceCalculator.Sample2.defaultEdgeLabel= edgeAppearanceCalculator.Sample2.defaultEdgeLineType=LINE_1 edgeAppearanceCalculator.Sample2.defaultEdgeSourceArrow=NONE edgeAppearanceCalculator.Sample2.defaultEdgeTargetArrow=NONE edgeAppearanceCalculator.Sample2.defaultEdgeToolTip= edgeAppearanceCalculator.Sample2.edgeColorCalculator=null edgeAppearanceCalculator.Sample2.edgeFontFaceCalculator=null edgeAppearanceCalculator.Sample2.edgeFontSizeCalculator=null edgeAppearanceCalculator.Sample2.edgeLabelCalculator=null edgeAppearanceCalculator.Sample2.edgeLineTypeCalculator=null edgeAppearanceCalculator.Sample2.edgeSourceArrowCalculator=null edgeAppearanceCalculator.Sample2.edgeTargetArrowCalculator=null edgeAppearanceCalculator.Sample2.edgeToolTipCalculator=null edgeAppearanceCalculator.default.defaultEdgeColor=0,0,0 edgeAppearanceCalculator.default.defaultEdgeFont=Default,plain,10 edgeAppearanceCalculator.default.defaultEdgeLabel= edgeAppearanceCalculator.default.defaultEdgeLineType=LINE_1 edgeAppearanceCalculator.default.defaultEdgeSourceArrow=NONE edgeAppearanceCalculator.default.defaultEdgeTargetArrow=NONE edgeAppearanceCalculator.default.defaultEdgeToolTip= edgeAppearanceCalculator.default.edgeColorCalculator=null edgeAppearanceCalculator.default.edgeFontFaceCalculator=null edgeAppearanceCalculator.default.edgeFontSizeCalculator=null edgeAppearanceCalculator.default.edgeLabelCalculator=null edgeAppearanceCalculator.default.edgeLineTypeCalculator=null edgeAppearanceCalculator.default.edgeSourceArrowCalculator=null edgeAppearanceCalculator.default.edgeTargetArrowCalculator=null edgeAppearanceCalculator.default.edgeToolTipCalculator=null edgeArrowCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeArrowCalculator edgeArrowCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeArrowCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeArrowCalculator.BasicContinuous.mapping.bv0.equal=NONE edgeArrowCalculator.BasicContinuous.mapping.bv0.greater=NONE edgeArrowCalculator.BasicContinuous.mapping.bv0.lesser=NONE edgeArrowCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeArrowCalculator.BasicContinuous.mapping.bv1.equal=NONE edgeArrowCalculator.BasicContinuous.mapping.bv1.greater=NONE edgeArrowCalculator.BasicContinuous.mapping.bv1.lesser=NONE edgeArrowCalculator.BasicContinuous.mapping.controller=pvalues edgeArrowCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeArrowCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeArrowCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeArrowCalculator edgeArrowCalculator.BasicDiscrete.mapping.controller=interaction edgeArrowCalculator.BasicDiscrete.mapping.map.pd=NONE edgeArrowCalculator.BasicDiscrete.mapping.map.pp=NONE edgeArrowCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeArrowCalculator.FCM\ arrow\ heads.class=cytoscape.visual.calculators.GenericEdgeArrowCalculator edgeArrowCalculator.FCM\ arrow\ heads.mapping.controller=edgeType edgeArrowCalculator.FCM\ arrow\ heads.mapping.map.Negative\ regulation=COLOR_T edgeArrowCalculator.FCM\ arrow\ heads.mapping.type=DiscreteMapping edgeColorCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeColorCalculator edgeColorCalculator.BasicDiscrete.mapping.controller=interaction edgeColorCalculator.BasicDiscrete.mapping.map.cr=255,150,0 edgeColorCalculator.BasicDiscrete.mapping.map.gd=0,255,255 edgeColorCalculator.BasicDiscrete.mapping.map.gl=0,255,0 edgeColorCalculator.BasicDiscrete.mapping.map.pd=255,0,0 edgeColorCalculator.BasicDiscrete.mapping.map.pp=0,0,255 edgeColorCalculator.BasicDiscrete.mapping.map.pr=255,0,255 edgeColorCalculator.BasicDiscrete.mapping.map.rc=150,150,0 edgeColorCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeColorCalculator.FCM\ EdgeType\ Colorer.class=cytoscape.visual.calculators.GenericEdgeColorCalculator edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.controller=edgeType edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Catalysis=0,0,204 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Composition-AND=204,102,0 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Composition-OR=255,204,0 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Enzymatic\ reaction=0,153,255 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Negative\ regulation=255,0,0 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.map.Positive\ regulation=0,255,0 edgeColorCalculator.FCM\ EdgeType\ Colorer.mapping.type=DiscreteMapping edgeFontFaceCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeFontFaceCalculator edgeFontFaceCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeFontFaceCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeFontFaceCalculator.BasicContinuous.mapping.bv0.equal=Default,bold,12 edgeFontFaceCalculator.BasicContinuous.mapping.bv0.greater=Default,plain,11 edgeFontFaceCalculator.BasicContinuous.mapping.bv0.lesser=Default,bold,12 edgeFontFaceCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeFontFaceCalculator.BasicContinuous.mapping.bv1.equal=Default,plain,11 edgeFontFaceCalculator.BasicContinuous.mapping.bv1.greater=Default,italic,10 edgeFontFaceCalculator.BasicContinuous.mapping.bv1.lesser=Default,plain,11 edgeFontFaceCalculator.BasicContinuous.mapping.controller=pvalues edgeFontFaceCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeFontFaceCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeFontFaceCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeFontFaceCalculator edgeFontFaceCalculator.BasicDiscrete.mapping.controller=interaction edgeFontFaceCalculator.BasicDiscrete.mapping.map.pd=Serif,italic,11 edgeFontFaceCalculator.BasicDiscrete.mapping.map.pp=Serif,bold,12 edgeFontFaceCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeFontSizeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeFontSizeCalculator edgeFontSizeCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeFontSizeCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeFontSizeCalculator.BasicContinuous.mapping.bv0.equal=12.0 edgeFontSizeCalculator.BasicContinuous.mapping.bv0.greater=11.0 edgeFontSizeCalculator.BasicContinuous.mapping.bv0.lesser=12.0 edgeFontSizeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeFontSizeCalculator.BasicContinuous.mapping.bv1.equal=11.0 edgeFontSizeCalculator.BasicContinuous.mapping.bv1.greater=10.0 edgeFontSizeCalculator.BasicContinuous.mapping.bv1.lesser=11.0 edgeFontSizeCalculator.BasicContinuous.mapping.controller=pvalues edgeFontSizeCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeFontSizeCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeFontSizeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeFontSizeCalculator edgeFontSizeCalculator.BasicDiscrete.mapping.controller=interaction edgeFontSizeCalculator.BasicDiscrete.mapping.map.pd=11.0 edgeFontSizeCalculator.BasicDiscrete.mapping.map.pp=12.0 edgeFontSizeCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeLabelCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeLabelCalculator edgeLabelCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeLabelCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeLabelCalculator.BasicContinuous.mapping.bv0.equal=good edgeLabelCalculator.BasicContinuous.mapping.bv0.greater=ok edgeLabelCalculator.BasicContinuous.mapping.bv0.lesser=good edgeLabelCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeLabelCalculator.BasicContinuous.mapping.bv1.equal=ok edgeLabelCalculator.BasicContinuous.mapping.bv1.greater=poor edgeLabelCalculator.BasicContinuous.mapping.bv1.lesser=ok edgeLabelCalculator.BasicContinuous.mapping.controller=pvalues edgeLabelCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeLabelCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeLabelCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeLabelCalculator edgeLabelCalculator.BasicDiscrete.mapping.controller=interaction edgeLabelCalculator.BasicDiscrete.mapping.map.pd=pd edgeLabelCalculator.BasicDiscrete.mapping.map.pp=pp edgeLabelCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeLabelCalculator.EdgeLabel.class=cytoscape.visual.calculators.GenericEdgeLabelCalculator edgeLabelCalculator.EdgeLabel.mapping.controller=interaction edgeLabelCalculator.EdgeLabel.mapping.type=PassThroughMapping edgeLabelCalculator.testPassThrough.class=cytoscape.visual.calculators.GenericEdgeLabelCalculator edgeLabelCalculator.testPassThrough.mapping.controller=label edgeLabelCalculator.testPassThrough.mapping.type=PassThroughMapping edgeLineTypeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeLineTypeCalculator edgeLineTypeCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeLineTypeCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeLineTypeCalculator.BasicContinuous.mapping.bv0.equal=LINE_3 edgeLineTypeCalculator.BasicContinuous.mapping.bv0.greater=LINE_1 edgeLineTypeCalculator.BasicContinuous.mapping.bv0.lesser=LINE_3 edgeLineTypeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeLineTypeCalculator.BasicContinuous.mapping.bv1.equal=LINE_1 edgeLineTypeCalculator.BasicContinuous.mapping.bv1.greater=DASHED_1 edgeLineTypeCalculator.BasicContinuous.mapping.bv1.lesser=LINE_1 edgeLineTypeCalculator.BasicContinuous.mapping.controller=pvalues edgeLineTypeCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeLineTypeCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeLineTypeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeLineTypeCalculator edgeLineTypeCalculator.BasicDiscrete.mapping.controller=interaction edgeLineTypeCalculator.BasicDiscrete.mapping.map.pd=LINE_1 edgeLineTypeCalculator.BasicDiscrete.mapping.map.pp=DASHED_1 edgeLineTypeCalculator.BasicDiscrete.mapping.type=DiscreteMapping edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).class=cytoscape.visual.calculators.GenericEdgeLineTypeCalculator edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.controller=certainty edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.map.direct\ evidence\ and\ accepted\ by\ experts=LINE_3 edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.map.indirect\ evidence=DASHED_2 edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.map.several\ lines\ of\ indirect\ evidence,\ weak\ direct\ evidence=DASHED_3 edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.map.wild\ hypothesis,\ model\ testing=DASHED_1 edgeLineTypeCalculator.FCM\ Edge\ Style\ (certainty).mapping.type=DiscreteMapping edgeLineTypeCalculator.InteractionType.class=cytoscape.visual.calculators.GenericEdgeLineTypeCalculator edgeLineTypeCalculator.InteractionType.mapping.controller=interaction edgeLineTypeCalculator.InteractionType.mapping.map.pd=DASHED_1 edgeLineTypeCalculator.InteractionType.mapping.map.pp=LINE_1 edgeLineTypeCalculator.InteractionType.mapping.type=DiscreteMapping edgeToolTipCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericEdgeToolTipCalculator edgeToolTipCalculator.BasicContinuous.mapping.boundaryvalues=2 edgeToolTipCalculator.BasicContinuous.mapping.bv0.domainvalue=0.0010 edgeToolTipCalculator.BasicContinuous.mapping.bv0.equal=smallest edgeToolTipCalculator.BasicContinuous.mapping.bv0.greater=small edgeToolTipCalculator.BasicContinuous.mapping.bv0.lesser=smallest edgeToolTipCalculator.BasicContinuous.mapping.bv1.domainvalue=0.01 edgeToolTipCalculator.BasicContinuous.mapping.bv1.equal=small edgeToolTipCalculator.BasicContinuous.mapping.bv1.greater=large edgeToolTipCalculator.BasicContinuous.mapping.bv1.lesser=small edgeToolTipCalculator.BasicContinuous.mapping.controller=pvalues edgeToolTipCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator edgeToolTipCalculator.BasicContinuous.mapping.type=ContinuousMapping edgeToolTipCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericEdgeToolTipCalculator edgeToolTipCalculator.BasicDiscrete.mapping.controller=interaction edgeToolTipCalculator.BasicDiscrete.mapping.map.pd=pd Tip edgeToolTipCalculator.BasicDiscrete.mapping.map.pp=pp Tip edgeToolTipCalculator.BasicDiscrete.mapping.type=DiscreteMapping globalAppearanceCalculator.FCMStyle.defaultBackgroundColor=255,255,255 globalAppearanceCalculator.FCMStyle.defaultEdgeReverseSelectionColor=153,0,153 globalAppearanceCalculator.FCMStyle.defaultEdgeSelectionColor=255,0,204 globalAppearanceCalculator.FCMStyle.defaultNodeReverseSelectionColor=153,0,153 globalAppearanceCalculator.FCMStyle.defaultNodeSelectionColor=255,51,204 globalAppearanceCalculator.FCMStyle.defaultSloppySelectionColor=128,128,128 globalAppearanceCalculator.Sample1.defaultBackgroundColor=255,255,255 globalAppearanceCalculator.Sample1.defaultEdgeReverseSelectionColor=0,255,0 globalAppearanceCalculator.Sample1.defaultEdgeSelectionColor=255,0,0 globalAppearanceCalculator.Sample1.defaultNodeReverseSelectionColor=0,255,0 globalAppearanceCalculator.Sample1.defaultNodeSelectionColor=255,255,0 globalAppearanceCalculator.Sample1.defaultSloppySelectionColor=128,128,128 globalAppearanceCalculator.Sample2.defaultBackgroundColor=255,255,255 globalAppearanceCalculator.Sample2.defaultEdgeReverseSelectionColor=0,255,0 globalAppearanceCalculator.Sample2.defaultEdgeSelectionColor=255,0,0 globalAppearanceCalculator.Sample2.defaultNodeReverseSelectionColor=0,255,0 globalAppearanceCalculator.Sample2.defaultNodeSelectionColor=255,255,0 globalAppearanceCalculator.Sample2.defaultSloppySelectionColor=128,128,128 globalAppearanceCalculator.default.defaultBackgroundColor=255,255,255 globalAppearanceCalculator.default.defaultEdgeReverseSelectionColor=0,255,0 globalAppearanceCalculator.default.defaultEdgeSelectionColor=255,0,0 globalAppearanceCalculator.default.defaultNodeReverseSelectionColor=0,255,0 globalAppearanceCalculator.default.defaultNodeSelectionColor=255,255,0 globalAppearanceCalculator.default.defaultSloppySelectionColor=128,128,128 nodeAppearanceCalculator.FCMStyle.defaultNodeBorderColor=0,0,0 nodeAppearanceCalculator.FCMStyle.defaultNodeFillColor=255,255,255 nodeAppearanceCalculator.FCMStyle.defaultNodeFont=Times New Roman Italic,plain,12 nodeAppearanceCalculator.FCMStyle.defaultNodeHeight=30.0 nodeAppearanceCalculator.FCMStyle.defaultNodeLabel= nodeAppearanceCalculator.FCMStyle.defaultNodeLineType=LINE_1 nodeAppearanceCalculator.FCMStyle.defaultNodeShape=rect nodeAppearanceCalculator.FCMStyle.defaultNodeToolTip= nodeAppearanceCalculator.FCMStyle.defaultNodeWidth=70.0 nodeAppearanceCalculator.FCMStyle.nodeBorderColorCalculator=null nodeAppearanceCalculator.FCMStyle.nodeFillColorCalculator=FCM Location Colorer nodeAppearanceCalculator.FCMStyle.nodeFontFaceCalculator=null nodeAppearanceCalculator.FCMStyle.nodeFontSizeCalculator=FCM Reaction Node Font Size nodeAppearanceCalculator.FCMStyle.nodeHeightCalculator=FCM Reaction Width nodeAppearanceCalculator.FCMStyle.nodeLabelCalculator=FCM Use Show Label nodeAppearanceCalculator.FCMStyle.nodeLabelColorCalculator=null nodeAppearanceCalculator.FCMStyle.nodeLineTypeCalculator=null nodeAppearanceCalculator.FCMStyle.nodeShapeCalculator=FCM Node Shape nodeAppearanceCalculator.FCMStyle.nodeSizeLocked=false nodeAppearanceCalculator.FCMStyle.nodeToolTipCalculator=null nodeAppearanceCalculator.FCMStyle.nodeWidthCalculator=FCM Reaction Height nodeAppearanceCalculator.Sample1.defaultNodeBorderColor=0,0,0 nodeAppearanceCalculator.Sample1.defaultNodeFillColor=204,204,255 nodeAppearanceCalculator.Sample1.defaultNodeFont=Default,plain,12 nodeAppearanceCalculator.Sample1.defaultNodeHeight=30.0 nodeAppearanceCalculator.Sample1.defaultNodeLabel= nodeAppearanceCalculator.Sample1.defaultNodeLineType=LINE_1 nodeAppearanceCalculator.Sample1.defaultNodeShape=ellipse nodeAppearanceCalculator.Sample1.defaultNodeToolTip= nodeAppearanceCalculator.Sample1.defaultNodeWidth=70.0 nodeAppearanceCalculator.Sample1.nodeBorderColorCalculator=null nodeAppearanceCalculator.Sample1.nodeFillColorCalculator=null nodeAppearanceCalculator.Sample1.nodeFontFaceCalculator=null nodeAppearanceCalculator.Sample1.nodeFontSizeCalculator=null nodeAppearanceCalculator.Sample1.nodeHeightCalculator=null nodeAppearanceCalculator.Sample1.nodeLabelCalculator=NodeLabel nodeAppearanceCalculator.Sample1.nodeLabelColorCalculator=null nodeAppearanceCalculator.Sample1.nodeLineTypeCalculator=null nodeAppearanceCalculator.Sample1.nodeShapeCalculator=null nodeAppearanceCalculator.Sample1.nodeSizeLocked=true nodeAppearanceCalculator.Sample1.nodeToolTipCalculator=null nodeAppearanceCalculator.Sample1.nodeWidthCalculator=null nodeAppearanceCalculator.Sample2.defaultNodeBorderColor=0,0,0 nodeAppearanceCalculator.Sample2.defaultNodeFillColor=255,255,255 nodeAppearanceCalculator.Sample2.defaultNodeFont=Default,plain,12 nodeAppearanceCalculator.Sample2.defaultNodeHeight=30.0 nodeAppearanceCalculator.Sample2.defaultNodeLabel= nodeAppearanceCalculator.Sample2.defaultNodeLineType=LINE_1 nodeAppearanceCalculator.Sample2.defaultNodeShape=ellipse nodeAppearanceCalculator.Sample2.defaultNodeToolTip= nodeAppearanceCalculator.Sample2.defaultNodeWidth=70.0 nodeAppearanceCalculator.Sample2.nodeBorderColorCalculator=null nodeAppearanceCalculator.Sample2.nodeFillColorCalculator=RedGreen nodeAppearanceCalculator.Sample2.nodeFontFaceCalculator=null nodeAppearanceCalculator.Sample2.nodeFontSizeCalculator=null nodeAppearanceCalculator.Sample2.nodeHeightCalculator=null nodeAppearanceCalculator.Sample2.nodeLabelCalculator=NodeLabel nodeAppearanceCalculator.Sample2.nodeLabelColorCalculator=null nodeAppearanceCalculator.Sample2.nodeLineTypeCalculator=null nodeAppearanceCalculator.Sample2.nodeShapeCalculator=null nodeAppearanceCalculator.Sample2.nodeSizeLocked=true nodeAppearanceCalculator.Sample2.nodeToolTipCalculator=null nodeAppearanceCalculator.Sample2.nodeWidthCalculator=null nodeAppearanceCalculator.default.defaultNodeBorderColor=0,0,0 nodeAppearanceCalculator.default.defaultNodeFillColor=255,255,255 nodeAppearanceCalculator.default.defaultNodeFont=Default,plain,12 nodeAppearanceCalculator.default.defaultNodeHeight=30.0 nodeAppearanceCalculator.default.defaultNodeLabel= nodeAppearanceCalculator.default.defaultNodeLineType=LINE_1 nodeAppearanceCalculator.default.defaultNodeShape=rect nodeAppearanceCalculator.default.defaultNodeToolTip= nodeAppearanceCalculator.default.defaultNodeWidth=70.0 nodeAppearanceCalculator.default.nodeBorderColorCalculator=null nodeAppearanceCalculator.default.nodeFillColorCalculator=null nodeAppearanceCalculator.default.nodeFontFaceCalculator=null nodeAppearanceCalculator.default.nodeFontSizeCalculator=null nodeAppearanceCalculator.default.nodeHeightCalculator=null nodeAppearanceCalculator.default.nodeLabelCalculator=label nodeAppearanceCalculator.default.nodeLabelColorCalculator=null nodeAppearanceCalculator.default.nodeLineTypeCalculator=null nodeAppearanceCalculator.default.nodeShapeCalculator=null nodeAppearanceCalculator.default.nodeSizeLocked=true nodeAppearanceCalculator.default.nodeToolTipCalculator=null nodeAppearanceCalculator.default.nodeWidthCalculator=null nodeColorCalculator.FCM\ Location\ Colorer.class=cytoscape.visual.calculators.GenericNodeColorCalculator nodeColorCalculator.FCM\ Location\ Colorer.mapping.controller=location nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.apoplast=102,153,255 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.cytosol=255,255,204 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.microbody=128,128,128 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.mitochondrial\ inner\ membrane=255,175,175 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.mitochondrial\ matrix=255,175,175 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.mitochondrion=255,175,175 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.nucleus=255,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.plastid=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.plastid\ envelope=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.plastid\ inner\ membrane=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.plastid\ outer\ membrane=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.plastid\ stroma=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.thylakoid=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.thylakoid\ lumen=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.thylakoid\ membrane=0,255,0 nodeColorCalculator.FCM\ Location\ Colorer.mapping.map.unknown=255,255,255 nodeColorCalculator.FCM\ Location\ Colorer.mapping.type=DiscreteMapping nodeColorCalculator.RedGreen.class=cytoscape.visual.calculators.GenericNodeColorCalculator nodeColorCalculator.RedGreen.mapping.boundaryvalues=3 nodeColorCalculator.RedGreen.mapping.bv0.domainvalue=-2.5 nodeColorCalculator.RedGreen.mapping.bv0.equal=255,0,0 nodeColorCalculator.RedGreen.mapping.bv0.greater=255,0,0 nodeColorCalculator.RedGreen.mapping.bv0.lesser=0,0,255 nodeColorCalculator.RedGreen.mapping.bv1.domainvalue=0.0 nodeColorCalculator.RedGreen.mapping.bv1.equal=255,255,255 nodeColorCalculator.RedGreen.mapping.bv1.greater=255,255,255 nodeColorCalculator.RedGreen.mapping.bv1.lesser=255,255,255 nodeColorCalculator.RedGreen.mapping.bv2.domainvalue=2.1 nodeColorCalculator.RedGreen.mapping.bv2.equal=0,255,102 nodeColorCalculator.RedGreen.mapping.bv2.greater=0,0,0 nodeColorCalculator.RedGreen.mapping.bv2.lesser=0,255,102 nodeColorCalculator.RedGreen.mapping.controller=gal1RGexp nodeColorCalculator.RedGreen.mapping.interpolator=LinearNumberToColorInterpolator nodeColorCalculator.RedGreen.mapping.type=ContinuousMapping nodeFontFaceCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeFontFaceCalculator nodeFontFaceCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeFontFaceCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeFontFaceCalculator.BasicContinuous.mapping.bv0.equal=Serif,italic,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv0.greater=Serif,italic,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv0.lesser=Serif,italic,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeFontFaceCalculator.BasicContinuous.mapping.bv1.equal=null,plain,10 nodeFontFaceCalculator.BasicContinuous.mapping.bv1.greater=Serif,bold,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv1.lesser=Serif,italic,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeFontFaceCalculator.BasicContinuous.mapping.bv2.equal=Serif,bold,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv2.greater=Serif,bold,12 nodeFontFaceCalculator.BasicContinuous.mapping.bv2.lesser=Serif,bold,12 nodeFontFaceCalculator.BasicContinuous.mapping.controller=expression nodeFontFaceCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeFontFaceCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeFontFaceCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeFontFaceCalculator nodeFontFaceCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeFontFaceCalculator.BasicDiscrete.mapping.map.autophagy=Serif,italic,11 nodeFontFaceCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=Serif,plain,10 nodeFontFaceCalculator.BasicDiscrete.mapping.map.cell\ cycle=Serif,bold,12 nodeFontFaceCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeFontSizeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeFontSizeCalculator nodeFontSizeCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeFontSizeCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv0.equal=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv0.greater=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv0.lesser=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv1.equal=10.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv1.greater=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv1.lesser=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv2.equal=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv2.greater=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.bv2.lesser=12.0 nodeFontSizeCalculator.BasicContinuous.mapping.controller=expression nodeFontSizeCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeFontSizeCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeFontSizeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeFontSizeCalculator nodeFontSizeCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeFontSizeCalculator.BasicDiscrete.mapping.map.autophagy=11.0 nodeFontSizeCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=10.0 nodeFontSizeCalculator.BasicDiscrete.mapping.map.cell\ cycle=12.0 nodeFontSizeCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeFontSizeCalculator.FCM\ Reaction\ Node\ Font\ Size.class=cytoscape.visual.calculators.GenericNodeFontSizeCalculator nodeFontSizeCalculator.FCM\ Reaction\ Node\ Font\ Size.mapping.controller=show nodeFontSizeCalculator.FCM\ Reaction\ Node\ Font\ Size.mapping.map.R=1.0 nodeFontSizeCalculator.FCM\ Reaction\ Node\ Font\ Size.mapping.type=DiscreteMapping nodeLabelCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeLabelCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeLabelCalculator.BasicContinuous.mapping.bv0.equal=under nodeLabelCalculator.BasicContinuous.mapping.bv0.greater=under nodeLabelCalculator.BasicContinuous.mapping.bv0.lesser=under nodeLabelCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeLabelCalculator.BasicContinuous.mapping.bv1.equal=zero nodeLabelCalculator.BasicContinuous.mapping.bv1.greater=over nodeLabelCalculator.BasicContinuous.mapping.bv1.lesser=under nodeLabelCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeLabelCalculator.BasicContinuous.mapping.bv2.equal=over nodeLabelCalculator.BasicContinuous.mapping.bv2.greater=over nodeLabelCalculator.BasicContinuous.mapping.bv2.lesser=over nodeLabelCalculator.BasicContinuous.mapping.controller=expression nodeLabelCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeLabelCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeLabelCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeLabelCalculator.BasicDiscrete.mapping.map.autophagy=autophagy nodeLabelCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=unknown nodeLabelCalculator.BasicDiscrete.mapping.map.cell\ cycle=cell cycle nodeLabelCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeLabelCalculator.BasicPassThrough.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.BasicPassThrough.mapping.controller=label nodeLabelCalculator.BasicPassThrough.mapping.type=PassThroughMapping nodeLabelCalculator.FCM\ Use\ Show\ Label.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.FCM\ Use\ Show\ Label.mapping.controller=show nodeLabelCalculator.FCM\ Use\ Show\ Label.mapping.type=PassThroughMapping nodeLabelCalculator.NodeLabel.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.NodeLabel.mapping.controller=ID nodeLabelCalculator.NodeLabel.mapping.type=PassThroughMapping nodeLabelCalculator.id\ as\ node\ labels.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.id\ as\ node\ labels.mapping.controller=ID nodeLabelCalculator.id\ as\ node\ labels.mapping.type=PassThroughMapping nodeLabelCalculator.label.class=cytoscape.visual.calculators.GenericNodeLabelCalculator nodeLabelCalculator.label.mapping.controller=ID nodeLabelCalculator.label.mapping.type=PassThroughMapping nodeLineTypeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeLineTypeCalculator nodeLineTypeCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeLineTypeCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeLineTypeCalculator.BasicContinuous.mapping.bv0.equal=DASHED_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv0.greater=DASHED_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv0.lesser=DASHED_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeLineTypeCalculator.BasicContinuous.mapping.bv1.equal=LINE_1 nodeLineTypeCalculator.BasicContinuous.mapping.bv1.greater=LINE_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv1.lesser=DASHED_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeLineTypeCalculator.BasicContinuous.mapping.bv2.equal=LINE_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv2.greater=LINE_3 nodeLineTypeCalculator.BasicContinuous.mapping.bv2.lesser=LINE_3 nodeLineTypeCalculator.BasicContinuous.mapping.controller=expression nodeLineTypeCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeLineTypeCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeLineTypeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeLineTypeCalculator nodeLineTypeCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeLineTypeCalculator.BasicDiscrete.mapping.map.autophagy=LINE_1 nodeLineTypeCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=LINE_2 nodeLineTypeCalculator.BasicDiscrete.mapping.map.cell\ cycle=LINE_3 nodeLineTypeCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeShapeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeShapeCalculator nodeShapeCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeShapeCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeShapeCalculator.BasicContinuous.mapping.bv0.equal=ellipse nodeShapeCalculator.BasicContinuous.mapping.bv0.greater=ellipse nodeShapeCalculator.BasicContinuous.mapping.bv0.lesser=ellipse nodeShapeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeShapeCalculator.BasicContinuous.mapping.bv1.equal=diamond nodeShapeCalculator.BasicContinuous.mapping.bv1.greater=rect nodeShapeCalculator.BasicContinuous.mapping.bv1.lesser=ellipse nodeShapeCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeShapeCalculator.BasicContinuous.mapping.bv2.equal=rect nodeShapeCalculator.BasicContinuous.mapping.bv2.greater=rect nodeShapeCalculator.BasicContinuous.mapping.bv2.lesser=rect nodeShapeCalculator.BasicContinuous.mapping.controller=expression nodeShapeCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeShapeCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeShapeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeShapeCalculator nodeShapeCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeShapeCalculator.BasicDiscrete.mapping.map.autophagy=rect nodeShapeCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=ellipse nodeShapeCalculator.BasicDiscrete.mapping.map.cell\ cycle=diamond nodeShapeCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeShapeCalculator.FCM\ Node\ Shape.class=cytoscape.visual.calculators.GenericNodeShapeCalculator nodeShapeCalculator.FCM\ Node\ Shape.mapping.controller=nodeType nodeShapeCalculator.FCM\ Node\ Shape.mapping.map.RNA=rect nodeShapeCalculator.FCM\ Node\ Shape.mapping.map.metabolite=ellipse nodeShapeCalculator.FCM\ Node\ Shape.mapping.map.polypeptide=diamond nodeShapeCalculator.FCM\ Node\ Shape.mapping.map.protein\ complex=diamond nodeShapeCalculator.FCM\ Node\ Shape.mapping.type=DiscreteMapping nodeSizeCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeSizeCalculator nodeSizeCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeSizeCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeSizeCalculator.BasicContinuous.mapping.bv0.equal=100.0 nodeSizeCalculator.BasicContinuous.mapping.bv0.greater=100.0 nodeSizeCalculator.BasicContinuous.mapping.bv0.lesser=100.0 nodeSizeCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeSizeCalculator.BasicContinuous.mapping.bv1.equal=50.0 nodeSizeCalculator.BasicContinuous.mapping.bv1.greater=50.0 nodeSizeCalculator.BasicContinuous.mapping.bv1.lesser=50.0 nodeSizeCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeSizeCalculator.BasicContinuous.mapping.bv2.equal=100.0 nodeSizeCalculator.BasicContinuous.mapping.bv2.greater=100.0 nodeSizeCalculator.BasicContinuous.mapping.bv2.lesser=100.0 nodeSizeCalculator.BasicContinuous.mapping.controller=expression nodeSizeCalculator.BasicContinuous.mapping.interpolator=LinearNumberToNumberInterpolator nodeSizeCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeSizeCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeSizeCalculator nodeSizeCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeSizeCalculator.BasicDiscrete.mapping.map.autophagy=50.0 nodeSizeCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=10.0 nodeSizeCalculator.BasicDiscrete.mapping.map.cell\ cycle=60.0 nodeSizeCalculator.BasicDiscrete.mapping.type=DiscreteMapping nodeSizeCalculator.FCM\ Reaction\ Height.class=cytoscape.visual.calculators.GenericNodeSizeCalculator nodeSizeCalculator.FCM\ Reaction\ Height.mapping.controller=show nodeSizeCalculator.FCM\ Reaction\ Height.mapping.map.R=2.0 nodeSizeCalculator.FCM\ Reaction\ Height.mapping.type=DiscreteMapping nodeSizeCalculator.FCM\ Reaction\ Width.class=cytoscape.visual.calculators.GenericNodeSizeCalculator nodeSizeCalculator.FCM\ Reaction\ Width.mapping.controller=show nodeSizeCalculator.FCM\ Reaction\ Width.mapping.map.R=2.0 nodeSizeCalculator.FCM\ Reaction\ Width.mapping.type=DiscreteMapping nodeToolTipCalculator.BasicContinuous.class=cytoscape.visual.calculators.GenericNodeToolTipCalculator nodeToolTipCalculator.BasicContinuous.mapping.boundaryvalues=3 nodeToolTipCalculator.BasicContinuous.mapping.bv0.domainvalue=-1.0 nodeToolTipCalculator.BasicContinuous.mapping.bv0.equal=less nodeToolTipCalculator.BasicContinuous.mapping.bv0.greater=less nodeToolTipCalculator.BasicContinuous.mapping.bv0.lesser=less nodeToolTipCalculator.BasicContinuous.mapping.bv1.domainvalue=0.0 nodeToolTipCalculator.BasicContinuous.mapping.bv1.equal=same nodeToolTipCalculator.BasicContinuous.mapping.bv1.greater=more nodeToolTipCalculator.BasicContinuous.mapping.bv1.lesser=less nodeToolTipCalculator.BasicContinuous.mapping.bv2.domainvalue=1.0 nodeToolTipCalculator.BasicContinuous.mapping.bv2.equal=more nodeToolTipCalculator.BasicContinuous.mapping.bv2.greater=more nodeToolTipCalculator.BasicContinuous.mapping.bv2.lesser=more nodeToolTipCalculator.BasicContinuous.mapping.controller=expression nodeToolTipCalculator.BasicContinuous.mapping.interpolator=FlatInterpolator nodeToolTipCalculator.BasicContinuous.mapping.type=ContinuousMapping nodeToolTipCalculator.BasicDiscrete.class=cytoscape.visual.calculators.GenericNodeToolTipCalculator nodeToolTipCalculator.BasicDiscrete.mapping.controller=GO Biological Process (level 4) nodeToolTipCalculator.BasicDiscrete.mapping.map.autophagy=autophagy Tip nodeToolTipCalculator.BasicDiscrete.mapping.map.biological_process\ unknown=unknown Tip nodeToolTipCalculator.BasicDiscrete.mapping.map.cell\ cycle=cell cycle Tip nodeToolTipCalculator.BasicDiscrete.mapping.type=DiscreteMapping