All Classes

AbbreviationChecker AbbreviationObject Abbreviationrules AbbreviationRules AbbreviationRules_btnClose_actionAdapter AbbreviationRules_btnDelete_actionAdapter AbbreviationRules_btnGenerate_actionAdapter AbbreviationRules_btnInsert_actionAdapter AbbreviationRules_btnModify_actionAdapter AbbreviationRules_btnSortLongTerm_actionAdapter AbbreviationRules_btnSortShortTerm_actionAdapter AbbreviationRulesModel AbbreviationTableModel AboutFrame AboutWindow AbstractAbbreviationrules AbstractAracycEntity AbstractAracycEntityWithLocation AbstractAracycFileReader AbstractBiocycElement AbstractBlockunit AbstractBlockunitabbreviation AbstractBlockunitcomment AbstractBlockunitconfidence AbstractBlockunitDecorator AbstractBlockunitref AbstractBlockunitsynonym AbstractBrendaactivatingcompound AbstractBrendacofactor AbstractBrendainhibitor AbstractBrendametalion AbstractBrendaproduct AbstractBrendarecommendname AbstractBrendaref AbstractBrendasubstrate AbstractBrendasynonyms AbstractChebiChemicalData AbstractChebiComments AbstractChebiCompounds AbstractChebiDatabaseAccession AbstractChebiNames AbstractChebiOntology AbstractChebiReference AbstractChebiRelation AbstractChebiVertices AbstractClassName AbstractCodeconfidence AbstractCodedatasource AbstractCodeentitytype AbstractCodeinteractiontype AbstractCodelocation AbstractCodeorganism AbstractCodePresentation AbstractCodereferencetype AbstractCoderule AbstractDictionary AbstractEntity AbstractEntityabbreviation AbstractEntitycomment AbstractEntityOntology AbstractEntityPubchem AbstractEntityPubchemName AbstractEntityref AbstractEntitysynonym AbstractEntitywithcontext AbstractExcelSheet AbstractExternaldb AbstractGraphMetaphor AbstractGraphProcessor AbstractGroupList AbstractGroupMember AbstractGroupShare AbstractGtairProperty AbstractHistoryFlatInteraction AbstractHistoryFlatLiveEntity AbstractHistoryFlatPathway AbstractInteraction AbstractInteractionparts AbstractInteractionproperties AbstractJExcelClient AbstractMetNetTable AbstractMetnetWindow AbstractMultiBlockunitDecorator AbstractMultiPathwayElementNode AbstractPathwayElementNode AbstractPathwayparts AbstractPlotData AbstractRClient AbstractTairAffy25kArrayElements AbstractTairAffy8kArrayElements AbstractTairAfgcArrayElements AbstractTairAgiToUniprot AbstractTairAracycDump AbstractTairAthGoGoslim AbstractTairSequencedGenes AbstractTairTargetpAnalysis AbstractTreeModel AbstractTrieNode AbstractUser AbstractVersionGraphMetaphor AbstractView ActionListComboBoxListener AddEntityForm AddInteractionForm AddPathwayController AddPathwayForm AddPathwayModel AdjacencyGraphWalker Affy25kID Affy8kID AffyChipAnimationPanel AfgcID AlignmentAlgorithm AlignmentMetaphor AlignmentObject AmorphousQueryForm AnimatedSwingWorker Annotation AnnotationRenderer AnnotationService AnnotationTextPanel AnnotationThread ArabReaderTest AracycClass AracycCompound AracycEntity AraCycForm AracycImporter AracycInteraction AracycPathway AraCycPathwayModel AsciiTrieNode AtGeneSearch AtGeneSearchLocusObject AtGeneSearchObject AtGeneSearchObjectImpl Attribute Attribute AttributeFileReader AttributeFileReaderEx AttributeFileReaderEx BackgroundTask BareBonesBrowserLaunch BiblioPanel BibTex BidiMultiHashMap BiocycClass BiocycCompound BiocycElement BiocycEnzrxn BiocycForm BiocycGene BiocycImporter BiocycPathway BiocycProtein BiocycReaction BiocycUtils BirdsEyeView BirdsEyeViewException BirdsEyeViewWindow Blip Blockunit Blockunitabbreviation BlockunitChoice Blockunitcomment BlockunitcommentKey Blockunitconfidence BlockunitFinder BlockunitFinderTest BlockunitObject BlockunitObjectImpl Blockunitref BlockunitrefKey Blockunitsynonym BlockunitSynonymCandidate BlockunitsynonymKey BlockunitTest BlockunitWorker BPathwaySelectionFrame Brendaactivatingcompound BrendaactivatingcompoundKey Brendacofactor BrendacofactorKey Brendainhibitor BrendainhibitorKey Brendametalion BrendametalionKey Brendaproduct BrendaproductKey Brendarecommendname Brendaref Brendasubstrate BrendasubstrateKey Brendasynonyms BrendasynonymsKey Browser ButtonPanel Candidate CandidateModel CategoryChooseForm CategoryCreateForm CategoryEditForm CategoryEncoder CategoryException CategoryLayoutAlgorithm CategoryMetaphor CategoryNode CategoryRenameForm CategoryTreeModel CellularLocation CellView CentricComparator ChangeName ChangePassword ChangeTracker ChartAnnotator ChartDataExporter ChartScrollBar ChartSelectionListener ChartToolBar CharType ChebiChemicalData ChebiComments ChebiCompounds ChebiDatabaseAccession ChebiImporter ChebiNameConverter ChebiNames ChebiObject ChebiOntology ChebiOntologyName ChebiOntologyTableModel ChebiReference ChebiRelation ChebiVertices CheckBoxHandler CheckBoxHandler CheckBoxHandler CheckCandidate ChemicalReactionMetaphor CitationListener CitationManager CitationPanel CitationPool ClassEditForm ClassesDatReader ClassName ClassName ClassTree Codeconfidence Codedatasource Codeentitytype Codeinteractiontype Codelocation CodelocationListModel Codeorganism Codereferencetype Coderule CoderuleCellEditor CoderuleCellRenderer CodeRulePresentation ColorBrickPanel ColorChooseButton ColoredTableCellRenderer ColorPanel ColorPicker ColumnEditorModel Comment CommentEditForm CommentObject CommentTableModel CommentTableModel ComparativeMetaphor CompareInPathBinder Compartment CompileWorker ComponentToImage CompositeTermPanel CompositionBlockunit CompositionGraphModel CompositionGraphModelChangedEvent CompositionGraphModelChangedListener CompositionRelationMetaphor CompositionSelectionModel CompoundsDatReader ConfidenceModel ConsoleApplication ContextFactory Controller CorrelationCalc CorrelationValue CreateListFrame CustomSortDialog CustomSortDialog.CustomSortObject CytoMetnet CytoscapeHMService Database DataManager DataOpener DataSorter DataThread DBSearchForm DefaultExcelSheet DefaultGraphMetaphor DefaultJExcelClient DefaultMetalTheme DefaultMetalThemeX DefaultMonitorable DefaultPlotData DefaultRClient DelegatingTableModel DescriptionFrame DesEncrypter Desert DictionaryBuilder DictionaryPanel DigitTrieNode DirectForm DisplayObject DnDTree DnDTree.DnDTreeCellRenderer DomainObjectListModel DualListPanel DualTablePanel DummyPath DuplicationChecker echo EditingLayoutAlgorithm EditingMetaphor EFetch ELink EmptyListException EndNote Entity Entity Entity Entity Entityabbreviation EntityabbreviationKey Entitycomment EntitycommentKey EntityConfidenceObservable EntityDBModel EntityEditor EntityFinder EntityIdNode EntityImpl EntityListModel EntityNameModel EntityNode EntityObjectTableModel EntityOntology EntityPanel EntityPart EntityPubchem EntityPubchemName Entityref EntityrefKey EntitySearchTableModel EntitySelector Entitysynonym EntitysynonymKey Entitywithcontext EntitywithcontextDecorator EntitywithcontextKey Entrez Environment EPost ESearch EUtility EUtility.Processor ExpandableLabel ExperimentChooserPanel ExperimentComboBoxListener ExploRaseBoxHandler ExploRaseBoxHandler ExploRaseExpFrame ExploRaseExportObj ExploRaseFrame ExploRaseSubmitListener ExploRaseSubmitListener ExploRaseThread Exporter ExportJungPathway ExportToBirdsEyeView ExportToExploRase ExportToMetaOmGraph ExportToMetaOmGraphImpl ExtendedInfoTree ExtendedInfoTreePanel Externaldb ExternaldbKey FCMetaphor FieldNotFoundException FileBar FileData FileFilterImpl FileSplitter FilesTableMouseListener FilterableTableModel FilterEntry FilterPanel FilterUpdater FirstForm FlatFileConverter FlippingSquaresThrobber FolderChange FuzzyTrieNode Gene GeneColor GeneImpl GeneList GeneName GenePanel GenePanel GenePanelLayout GenePanelListener GenePanelListener GenericTree GlobalGraphWalker GlowyChipThrobber GobiNode GobiNodeImpl GobiNodeImpl GoBiologicalProcess GoBioProcessView GoCellularComponent GoDownListener GoFunctionView GoLevel GoMolecularFunction GoNode GoNodeMouseListener Google GoogleScholar GoTerm GoTermID GoTermID GoUpListener GoView GraphExporter GraphExporterImpl GraphExporterTest GraphFileFilter GraphStatistics GraphValidity GraphWalker GroupList GroupListTableModel GroupManagerForm GroupMember GroupMemberKey GroupObject GroupShare GroupShareKey GroupShareTableModel GtairProperty GUID HashDictionary HelpButton HelpButtonAction HelpResource HelpWindow HexUtil HibernateTest HiddenLink HiddenLink.Link HiddenLinkFrame HierachyLayoutAlgorithm Highlightable HighlightableTextPane Highlighter HintParse HistoryBlockunit HistoryBlockunitImpl HistoryFlatInteraction HistoryFlatLiveEntity HistoryFlatPathway HistoryInformation HistoryReportForm HistoryTableModel HyperLinkCellRenderer HyperlinkLabel IAracycEntity IAracycEntityWithLocation IAracycFileReader ICodePresentation IconLib IExcelClient IExcelSheet IGraphMetaphor IGraphProcessor ImagePanel ImageThrobber IMetnetBlockUnit IMetNETTable IMetnetWindow ImportListDialog InfoPopupManager InfoTheory InputEncoder InputLayoutAlgorithm InputNode Interaction InteractionDecorator InteractionFix InteractionInfo InteractionInformation InteractionNode InteractionObject InteractionObjectTableModel Interactionparts InteractionpartsKey InteractionPartsModel Interactionproperties InteractionSearchForm InteractionSearchTableModel InteractionSelector InteractionSelectorModel InteractionStructure InteractionUpdatePanel InteractionWorker InteractUpdate IntermediumEntityInformation IPlotData IRClient IsomorphismMetaphor JarResources JCategoryGraph JDBCComboModel JGraphEncoder JGraphParallelEdgeRouter JInputGraph JMetaphorGraph JMultilineLabel KeyCoder LabelledComponent LabelsButtonListener LaunchApplicationListener Launcher LaunchMetNet LegendPanel LetterDigitTrieNode LetterTrieNode Limits List ListModelHolder ListNode ListPanel ListTable ListTransferHandler ListTransferHandler.DraggableRows ListTree ListTree.DraggableNode LiveEntitySearchForm LoadButtonListener LoadCancelButtonListener LoadController Loader LoadFileButtonListener LoadOkButtonListener LoadPanel LoadWindow LocationNode LocationPanel Locusid LocusInformationForm LocusInformationTable LocusInformationTableModel LogonForm LowerTrieNode MainExperimentComboBoxListener MainMenuListener MainWindow2 MapbuilderHelpFrame MapBuilderPanel Markable MarkableHeaderRenderer MarkListener MD5Digest MD5DigestTest MedCitation MedCrawler MedCrawlerPanel MedLeaseClient MedLeasePanel MedlineParser MemberManagerForm MenuActionListener MenuButton MeshDescriptor MetaboliteObject MetaboliteObjectImpl MetaCrawler MetalUtils MetalUtilsX MetaOmAnalyzer MetaOmChartPanel MetaOmGraph MetaOmGraph.NewProjectWorker MetaOmHelpListener MetaOmProject MetaOmTablePanel MetaOmThrobber MetaOmTips MetaOmTips.MetaOmShowTipsChoice MetaphorTypeInformation MetNetAboutFrame MetnetBlockUnit MetNetGUI MetNetHelpBar MetnetInteraction MetNetLAF MetNetLAF MetNetLAFTest MetnetLiveEntity MetnetLocation MetNetMetalTheme MetNetMetalTheme MetNetOceanTheme MetNetOceanTheme MetnetPathway MetnetPathway MetNetStatusbar MetNetTitlePane MetNetToolbar ModelListerner Monitorable MultiEntityDecorator MultiEntityNode MultiInteractionDecorator MultiInteractionNode MultiNodeCell MultiPathwayElementNode MultiPathwayGraph MultiPathwayGraphImpl MultiPathwayModel MultiSelectionModel MultiVertexView MultiVertexView.MultiVertexRenderer MyClass MyFacade MyFacadeFactory MyFacadeHome MyFacadeLocal MyFacadeLocalHome MyFacadeTest MyFacadeUtil MyJGraphModelAdapter MyJGraphModelAdapter.ICellFactory MyJTableEx MyMarqueeHandler MyMetnetService MyMetnetServiceFactory MyMetnetServiceHome MyMetnetServiceLocal MyMetnetServiceLocalHome MyMetnetServiceUtil MyPanel MyPaper MyPaperFactory MyPaperHome MyPaperTest MyPaperUtil MyPathwayGraph MyRClient MySolver MySolverTest MySqlConnector MyTreeAlgorithm MyVersionGraph MyVersionNode MyXmlRpcClientFactory NameCharType NameService NameSource NetworkEditForm NetworkEditHelper NetworkEncoder NewProjectDialog NodeInfo NodeSelectionController NodeSelectionForm NodeSelectionModel NoneditableTableModel NoneditableTableModel NoSuchNodeException NoSuchNodeException Oasis OceanTheme OceanThemeX oldDataOpener oldWizardPanel OrderableTable OverviewPanel OverviewPanel PanelLocationsFactory ParenFinder ParenParser PathBinder PathBinderUpdater Pathway Pathway PathwayA PathwayAlignment PathwayAlignmentImpl PathwayCategoryNode PathwayCategoryNodeImpl PathwayChoiceModel PathwayChoiceTableModel PathwayDecorator PathwayEditor PathwayElementMetaphor PathwayElementNode PathwayGeneThread PathwayGraph PathwayGraphImpl PathwayHighlightForm PathwayInfo PathwayInfoImpl PathwayModel PathwayObject PathwayObjectChoice PathwayObjectTableModel PathwayObjectWorker Pathwayparts PathwaypartsKey PathwaySelectionFrame PathwaySelectionFrame PathwaySelector2 PathwayService PathwaySubmitListener PathwaySubmitListener PathwaySubmitListener PathwayTableModel PathwayTreeNode PathwayView PbFrame PbidNode PbSentence PbViewer Platform PlatformService PluralDetector PmidFilter PmidTablePanel PointInfoPanel PolygonPanel PolygonPanel.BouncingPolygon PolygonThrobber Polypeptide PorterStemmer PredictedLocation ProcessListener ProcessWrapper ProcessWrapper.CmdNotFoundException ProCite ProgressMonitor ProjectPropertiesPanel Properties PropertiesMetalTheme PropertyTable PropsWindow Protein ProteinComplex PrototypeAnnotations PubMedAssistant PubMedFetcher PubMedQuerier PubMedSampler PubMedTimer Query Query.CompositeTerm Query.Field Query.Operator Query.SimpleTerm Query.Term QueryBuilder QueryConsumer QueryListener QueryPanel QueryParser QueryTreeCellEditor QueryTreeCellRenderer QueryTreeCellRenderer2 Queue Queue QueueListener RandomAccessFile RandomAccessFile RandomLayoutAlgorithm RangeMarker RangeSelector ReferenceEditForm ReferenceObject ReferenceTableModel ReferenceTableModel RefService RegisterForm RegisterForm2 RelationMap RelationObject RemoteControl RemoteReceiver RemoveBridgeNodes RemoveCompositionNodes RemoveSelectedNodes RequestGene RequestGeneData ResetButton ResultSetAdapter ReturnCode RiceReaderTest RootPanel RowEditorModel RowHeaderRenderer RowHeaderTable RunCytoscape RunningBuffer Sample SaveButtonListener SBMLExporter ScreenUtil ScriptSink ScrollingTexturePanel SearchByPubMed SearchDialog SearchDialog_btnAppply_actionAdapter SearchDialog_btnClose_actionAdapter SearchInteractionTypeMetaphor SearchNameMetaphor SearchPanel SelectAllButton SelectedBlockunit SelectionListener SelectionListener SelectPathwayPanel SentencePane SentenceParser SentenceScorer SentenceService Series ServiceTest SimpleChipAnimationPanel SimpleGeneObj SimpleModalMaker SimpleTermPanel SlidingWindow SOFTException SOFTFile SOFTParser SOFTParserOptionPanel SortableData SortableHeaderRenderer SoybeanHomology SpeciesChoice SpeciesSelector SpeciesTableModel SpinnerAdapterFactory SpinningPolygonThrobber Splash SplashWindow SpringUtilities StatusBar Stemmer StreamXMLParser StringTest StripedTable StructuralQueryForm StructureQueryHelper SwingWorker SwingWorker SwingWorker SwingWorker2 SynonymCandidate SynonymCandidate_btnApprove_actionAdapter SynonymCandidate_btnCheckAll_actionAdapter SynonymCandidate_btnExtractLimit_actionAdapter SynonymCandidate_btnUncheckAll_actionAdapter SynonymEditForm SynonymObject SynonymTableModel SynonymTableModel TableAbbreviationRules TableBlockUnitConfidence TableClassRelation TableCodeClass TableCodeConfidence TableDataModel TableMap TableMap TableMarker TableSorter TableSorter TableSorter TableUtil TabularFileReader TabularFileReaderEx TairAffy25kArrayElements TairAffy8kArrayElements TairAfgcArrayElements TairAgiToUniprot TairAracycDump TairAthGoGoslim TairReference TairReferenceObject TairSequencedGenes TairTargetpAnalysis TaxonomyPanel TextArea TextPanel Throbber TipRenderer TokenAnalyzer TokenProcessor TreeModelSupport TreePanel TreeSearcher TreeSearcher.Query TreeSearchQueryConstructionPanel TreeSearchQueryConstructionPanel.QuerySet TreeUtil Trie TrieDictionary TrieNode TrivialMetabolite TrivialNodePanel TrivialSelector TrivialTableModel UISwitchListener UmlsQueryClient UmlsSocketClient UniprotID User UserListTableModel Utils Utils UtilsTest ValidityMetaphor VerbNode VerbPanel VersionEditor VersionEncoder VersionGraph VersionGraphMetaphor VersionGraphModel VersionListener VersionSaver VersionyLayoutAlgorithm ViewComboBoxListener ViewFactory ViewInfo ViewPanel VocabularyCounter VocabularyCounter.TfDf WaitingDialog WebDBService WordTrieNode WriterOpener XMLBuilder XMLizable XMLMutableTreeNode XMLRPCClient XmlTreeModel XmlTreeNode ZEdge ZVertex