edu.iastate.biocyc.dao.txt
Class BiocycEnzrxn

java.lang.Object
  edu.iastate.biocyc.dao.txt.AbstractBiocycElement
      edu.iastate.biocyc.dao.txt.BiocycEnzrxn

All Implemented Interfaces:

BiocycElement

public class BiocycEnzrxn
extends AbstractBiocycElement

hold data for enzymatic reactions

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger

logger log4j facility

Fields inherited from class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

dataMap

Constructor Summary

BiocycEnzrxn(java.util.Map dataMap)
default constrcutor

Method Summary

Blockunit	createBlockunit(java.lang.String organism, java.lang.String username, java.lang.String source) create the blockunit
java.util.Collection	getDblinkList() get the external database link
java.lang.String	getEnzyme() get enzyme list
java.lang.String	getReaction() get the controlled interactio unique id
static java.util.Map	toBiocycMap(java.util.Map dataMap) instance map contains the unique id key and biocyc element value

Methods inherited from class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

adjustName, duplicatedName, getCitationList, getCommentList, getCommonName, getDataMap, getFirst, getSynonymList, getTypeList, getUniqueId, isNumeric, joinCommonProperties, joinConfidence, setDataMap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

Constructor Detail

BiocycEnzrxn

public BiocycEnzrxn(java.util.Map dataMap)

default constrcutor

Parameters:

dataMap - the attribute value map

Method Detail

getDblinkList

public java.util.Collection getDblinkList()

get the external database link

Returns:

the external database link

getReaction

public java.lang.String getReaction()

get the controlled interactio unique id

Returns:

the controlled interaction unique id

getEnzyme

public java.lang.String getEnzyme()

get enzyme list

Returns:

the enzyme unique id list

toBiocycMap

public static java.util.Map toBiocycMap(java.util.Map dataMap)

instance map contains the unique id key and biocyc element value

Parameters:

dataMap - the data map

Returns:

the instance map

createBlockunit

public Blockunit createBlockunit(java.lang.String organism,
                                 java.lang.String username,
                                 java.lang.String source)

Description copied from interface: BiocycElement

create the blockunit

Specified by:

createBlockunit in interface BiocycElement

Specified by:

createBlockunit in class AbstractBiocycElement

Returns:

create the blockunit