edu.iastate.jtm.jmed
Class CitationManager

java.lang.Object
  edu.iastate.jtm.gui.DefaultMonitorable
      edu.iastate.jtm.jmed.CitationManager

All Implemented Interfaces:

Monitorable

Direct Known Subclasses:

BibTex, EndNote, ProCite

public abstract class CitationManager
extends DefaultMonitorable

Author:

Jing Ding edu.iastate.jtm.assistant jtm

Field Summary

Fields inherited from class edu.iastate.jtm.gui.DefaultMonitorable

message, monitorable, progress

Constructor Summary

CitationManager()

Method Summary

protected abstract java.lang.String	convert(org.dom4j.Element citation)
void	export(java.io.File outfile, org.dom4j.Element[] citations)
static java.lang.String	getAbstract(org.dom4j.Element citation)
static java.lang.String[]	getAuthorFullnames(org.dom4j.Element citation, boolean lastFirst)
static java.lang.String[]	getAuthorInitials(org.dom4j.Element citation)
static java.lang.String	getBestJournalId(org.dom4j.Element citation)
static java.lang.String	getDetailedDate(org.dom4j.Element citation)
static java.lang.String	getFirstAuthor(org.dom4j.Element citation)
static java.lang.String	getFullJournal(org.dom4j.Element citation)
static java.lang.String	getISSN(org.dom4j.Element citation)
static java.lang.String	getIssue(org.dom4j.Element citation)
static java.lang.String	getJournal(org.dom4j.Element citation)
static java.util.List	getMeshHeadingList(org.dom4j.Element cit)
static java.lang.String	getNlmUniqueID(org.dom4j.Element citation)
static java.lang.String	getPage(org.dom4j.Element citation, boolean expandCompact)
static java.lang.String[]	getPages(org.dom4j.Element citation)
static java.lang.String	getPmid(org.dom4j.Element citation)
static java.lang.String	getPubYear(org.dom4j.Element citation, boolean longForm)
static java.lang.String	getTitle(org.dom4j.Element citation)
static java.lang.String	getVIP(org.dom4j.Element citation)
static java.lang.String	getVolume(org.dom4j.Element citation)

Methods inherited from class edu.iastate.jtm.gui.DefaultMonitorable

getMessage, getProgress, isDeterministic, isFinished, isMonitorable, isRunning, setMessage, setMonitorable, setProgress

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CitationManager

public CitationManager()

Method Detail

convert

protected abstract java.lang.String convert(org.dom4j.Element citation)

getPmid

public static java.lang.String getPmid(org.dom4j.Element citation)

getTitle

public static java.lang.String getTitle(org.dom4j.Element citation)

getAuthorFullnames

public static java.lang.String[] getAuthorFullnames(org.dom4j.Element citation,
                                                    boolean lastFirst)

getAuthorInitials

public static java.lang.String[] getAuthorInitials(org.dom4j.Element citation)

getFirstAuthor

public static java.lang.String getFirstAuthor(org.dom4j.Element citation)

getPubYear

public static java.lang.String getPubYear(org.dom4j.Element citation,
                                          boolean longForm)

getJournal

public static java.lang.String getJournal(org.dom4j.Element citation)

getFullJournal

public static java.lang.String getFullJournal(org.dom4j.Element citation)

getISSN

public static java.lang.String getISSN(org.dom4j.Element citation)

getNlmUniqueID

public static java.lang.String getNlmUniqueID(org.dom4j.Element citation)

getBestJournalId

public static java.lang.String getBestJournalId(org.dom4j.Element citation)

getPage

public static java.lang.String getPage(org.dom4j.Element citation,
                                       boolean expandCompact)

getPages

public static java.lang.String[] getPages(org.dom4j.Element citation)

getVolume

public static java.lang.String getVolume(org.dom4j.Element citation)

getIssue

public static java.lang.String getIssue(org.dom4j.Element citation)

getVIP

public static java.lang.String getVIP(org.dom4j.Element citation)

getDetailedDate

public static java.lang.String getDetailedDate(org.dom4j.Element citation)

getAbstract

public static java.lang.String getAbstract(org.dom4j.Element citation)

export

public void export(java.io.File outfile,
                   org.dom4j.Element[] citations)
            throws java.io.IOException

Throws:

java.io.IOException

getMeshHeadingList

public static java.util.List getMeshHeadingList(org.dom4j.Element cit)

Parameters:

cit -

Returns: