edu.iastate.jtm.jmed
Class Limits

java.lang.Object
  edu.iastate.jtm.jmed.Limits

public class Limits
extends java.lang.Object

Encapsulate PubMed interface's limits.

Author:

Jing Ding

Field Summary

static int	ABSTRACT
static int	ACC
static int	AFFILIATION
static int	ALLFIELD
static int	ASN
static int	AUTHOR
static int	BRIEF
static int	CHR
static int	CITATION
static int	COUNT
static java.lang.String	DEF_MAXDATE
static java.lang.String	DEF_MINDATE
static int	DEFAULT
static int	DOCSET
static int	ECRN
static int	ENTREZDATE
static int	EST
static int	FASTA
static int	FILTER
static int	FLT
static int	FULL
static int	GB
static int	GBC
static int	GBWITHPARTS
static int	GP
static int	GPC
static int	GSS
static int	HTML
static int	ISSUE
static int	JOURNAL
static int	LAST10YEAR
static int	LAST1MONTH
static int	LAST1WEEK
static int	LAST1YEAR
static int	LAST2MONTH
static int	LAST2WEEK
static int	LAST2YEAR
static int	LAST3MONTH
static int	LAST3WEEK
static int	LAST4WEEK
static int	LAST5YEAR
static int	LAST6MONTH
static int	LNG
static int	MAJOR
static int	MDATE
static int	MEDLINE
static int	MESH
static int	NATIVE
static int	PAGE
static int	PDATE
static int	PTYPE
static int	PUBDATE
static int	RSR
static int	SEQID
static int	SID
static int	SUBHEADING
static int	SUBSTANCE
static int	TEXT
static int	TITLE
static int	TITLEABS
static int	TXT
static int	uid
static int	UILIST
static int	VOLUME
static int	XML

Constructor Summary

Limits()

Limits(Limits lim)

Method Summary

void	clear()
java.lang.String	getField()
boolean	historyUsed()
void	setComplexity(int c) Gi is often a part of a biological blob, containing other gis.
void	setDateType(int dt)
void	setField(int f)
void	setFromDate(java.lang.String fd)
void	setQueryKey(java.lang.String key)
void	setRelativeDate(int d)
void	setRetrieveCount(int count)
void	setRetrieveMode(int rm)
void	setRetrieveStartNum(int num)
void	setRetrieveType(int rt)
void	setSeqStart(int s) Show sequence starting from this base number.
void	setSeqStop(int s) Show sequence ending on this base number.
void	setStrand(int s) What strand of DNA to show (1=plus or 2=minus).
void	setToDate(java.lang.String td)
void	setUseHistory(boolean use)
void	setWebEnv(java.lang.String we)
java.lang.String	toString()
void	updateHistory(org.dom4j.Document result)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DEFAULT

public static final int DEFAULT

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Constant Field Values

DEF_MINDATE

public static final java.lang.String DEF_MINDATE

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DEF_MAXDATE

public static final java.lang.String DEF_MAXDATE

ALLFIELD

public static final int ALLFIELD

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AFFILIATION

public static final int AFFILIATION

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AUTHOR

public static final int AUTHOR

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ECRN

public static final int ECRN

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JOURNAL

public static final int JOURNAL

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ISSUE

public static final int ISSUE

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MESH

public static final int MESH

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MAJOR

public static final int MAJOR

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MDATE

public static final int MDATE

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PAGE

public static final int PAGE

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PDATE

public static final int PDATE

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PTYPE

public static final int PTYPE

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SID

public static final int SID

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SUBSTANCE

public static final int SUBSTANCE

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SUBHEADING

public static final int SUBHEADING

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TITLEABS

public static final int TITLEABS

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TEXT

public static final int TEXT

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TITLE

public static final int TITLE

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LNG

public static final int LNG

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uid

public static final int uid

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FILTER

public static final int FILTER

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VOLUME

public static final int VOLUME

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LAST1WEEK

public static final int LAST1WEEK

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LAST2WEEK

public static final int LAST2WEEK

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LAST3WEEK

public static final int LAST3WEEK

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LAST4WEEK

public static final int LAST4WEEK

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LAST1MONTH

public static final int LAST1MONTH

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LAST2MONTH

public static final int LAST2MONTH

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LAST3MONTH

public static final int LAST3MONTH

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LAST6MONTH

public static final int LAST6MONTH

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LAST1YEAR

public static final int LAST1YEAR

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LAST2YEAR

public static final int LAST2YEAR

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LAST5YEAR

public static final int LAST5YEAR

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LAST10YEAR

public static final int LAST10YEAR

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PUBDATE

public static final int PUBDATE

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ENTREZDATE

public static final int ENTREZDATE

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XML

public static final int XML

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HTML

public static final int HTML

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TXT

public static final int TXT

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ASN

public static final int ASN

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COUNT

public static final int COUNT

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UILIST

public static final int UILIST

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ABSTRACT

public static final int ABSTRACT

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CITATION

public static final int CITATION

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MEDLINE

public static final int MEDLINE

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FULL

public static final int FULL

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NATIVE

public static final int NATIVE

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FASTA

public static final int FASTA

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GB

public static final int GB

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GBC

public static final int GBC

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GBWITHPARTS

public static final int GBWITHPARTS

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EST

public static final int EST

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GSS

public static final int GSS

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GP

public static final int GP

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GPC

public static final int GPC

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SEQID

public static final int SEQID

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ACC

public static final int ACC

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CHR

public static final int CHR

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FLT

public static final int FLT

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RSR

public static final int RSR

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BRIEF

public static final int BRIEF

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DOCSET

public static final int DOCSET

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Constructor Detail

Limits

public Limits()

Limits

public Limits(Limits lim)

Method Detail

setField

public void setField(int f)

getField

public java.lang.String getField()

setUseHistory

public void setUseHistory(boolean use)

historyUsed

public boolean historyUsed()

setWebEnv

public void setWebEnv(java.lang.String we)

setQueryKey

public void setQueryKey(java.lang.String key)

setRelativeDate

public void setRelativeDate(int d)

setFromDate

public void setFromDate(java.lang.String fd)

setToDate

public void setToDate(java.lang.String td)

setDateType

public void setDateType(int dt)

setRetrieveStartNum

public void setRetrieveStartNum(int num)

setRetrieveCount

public void setRetrieveCount(int count)

setStrand

public void setStrand(int s)

What strand of DNA to show (1=plus or 2=minus). Other value clears the property.

Parameters:

s -

setSeqStart

public void setSeqStart(int s)

Show sequence starting from this base number. Negative number clears the property.

Parameters:

s -

setSeqStop

public void setSeqStop(int s)

Show sequence ending on this base number. Negative number clears the property.

Parameters:

s -

setComplexity

public void setComplexity(int c)

Gi is often a part of a biological blob, containing other gis. Complexity regulates the display: 0 - get the whole blob 1 - get the bioseq for gi of interest (default in Entrez) 2 - get the minimal bioseq-set containing the gi of interest 3 - get the minimal nuc-prot containing the gi of interest 4 - get the minimal pub-set containing the gi of interest Other values clear the property.

Parameters:

c -

setRetrieveMode

public void setRetrieveMode(int rm)

setRetrieveType

public void setRetrieveType(int rt)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

clear

public void clear()

updateHistory

public void updateHistory(org.dom4j.Document result)