edu.iastate.metnet.aracyc
Class AracycImporter

java.lang.Object
  edu.iastate.metnet.aracyc.AracycImporter

public class AracycImporter
extends java.lang.Object

dispatcher to other file reader and importer
the zip file format

compounds.dat # UNIQUE-ID # TYPES # COMMON-NAME # APPEARS-IN-BINDING-REACTIONS # ATOM-CHARGES # CAS-REGISTRY-NUMBERS # CHARGE # CHEMICAL-FORMULA # CITATIONS # COMMENT # DBLINKS # MOLECULAR-WEIGHT # N+1-NAME # N-1-NAME # N-NAME # ORIGINAL-FRAME-TYPE # PKA1 # PKA2 # PKA3 # SMILES # SUPERATOMS # SYNONYMS # SYSTEMATIC-NAME

enzrxns.dat # UNIQUE-ID # TYPES # COMMON-NAME # ACTIVATORS # ACTIVATORS-ALLOSTERIC # ACTIVATORS-MECHNOTSTATED # ACTIVATORS-NONALLOSTERIC # ALTERNATIVE-COFACTORS # ALTERNATIVE-SUBSTRATES # BASIS-FOR-ASSIGNMENT # CITATIONS # COFACTOR-BINDING-COMMENT # COFACTORS # COFACTORS-OR-PROSTHETIC-GROUPS # COMMENT # DBLINKS # ENZYME # INHIBITORS # INHIBITORS-ALLOSTERIC # INHIBITORS-COMPETITIVE # INHIBITORS-MECHNOTSTATED # INHIBITORS-NEITHER # INSTANCE-NAME-TEMPLATE # KEY-SLOT # PHYSIOLOGICALLY-RELEVANT # PROSTHETIC-GROUPS # REACTION # REACTION-DIRECTION # REQUIRED-PROTEIN-COMPLEX # SYNONYMS

enzymes.col # UNIQUE-ID # NAME # REACTION-EQUATION # PATHWAYS # COFACTORS # ACTIVATORS # INHIBITORS # SUBUNIT-COMPOSITION

genes.col # UNIQUE-ID # NAME # PRODUCT-NAME # SWISS-PROT-ID # REPLICON # START-BASE # END-BASE # SYNONYMS # GENE-CLASS

genes.dat # UNIQUE-ID # TYPES # COMMON-NAME # APPEARS-IN-BINDING-REACTIONS # CENTISOME-POSITION # CITATIONS # COMMENT # COMPONENT-OF # COMPONENTS # DBLINKS # EVIDENCE # IN-PARALOGOUS-GENE-GROUP # INSTANCE-NAME-TEMPLATE # INTERRUPTED? # KEY-SLOT # LEFT-END-POSITION # PRODUCT # PRODUCT-STRING # PRODUCT-TYPES # RIGHT-END-POSITION # SYNONYMS # TRANSCRIPTION-DIRECTION

pathways.col # UNIQUE-ID # NAME # GENE-NAME # GENE-ID

pathways.dat # UNIQUE-ID # TYPES # COMMON-NAME # CLASS-INSTANCE-LINKS # DBLINKS # DELTAG0 # ENZYME-USE # HYPOTHETICAL-REACTIONS # IN-PATHWAY # NET-REACTION-EQUATION # PATHWAY-INTERACTIONS # PATHWAY-LINKS # POLYMERIZATION-LINKS # PREDECESSORS # PRIMARIES # REACTION-LIST # SPECIES # SPONTANEOUS? # SUB-PATHWAYS # SUPER-PATHWAYS # SYNONYMS

protcplx.col # UNIQUE-ID # NAME # GENE-NAME # GENE-ID # SUBUNIT-COMPOSITION

proteins.dat # UNIQUE-ID # TYPES # COMMON-NAME # APPEARS-IN-BINDING-REACTIONS # ATOM-CHARGES # ATOM-CHIRALITY # CATALYZES # CHEMICAL-FORMULA # CITATIONS # COMMENT # COMPONENT-COEFFICIENTS # COMPONENT-OF # COMPONENTS # DBLINKS # DNA-FOOTPRINT-SIZE # FUNCTIONAL-ASSIGNMENT-COMMENT # FUNCTIONAL-ASSIGNMENT-STATUS # GENE # INSTANCE-NAME-TEMPLATE # ISOZYME-SEQUENCE-SIMILARITY # KEY-SLOT # LOCATIONS # MODIFIED-FORM # MOLECULAR-WEIGHT # MOLECULAR-WEIGHT-EXP # MOLECULAR-WEIGHT-KD # MOLECULAR-WEIGHT-SEQ # N+1-NAME # N-1-NAME # N-NAME # NEIDHARDT-SPOT-NUMBER # PI # SPECIES # SPLICE-FORM-INTRONS # STRUCTURE-BONDS # SYMMETRY # SYNONYMS # UNMODIFIED-FORM

reactions.dat # UNIQUE-ID # TYPES # COMMON-NAME # ACTIVATORS # BASAL-TRANSCRIPTION-VALUE # CITATIONS # COMMENT # DBLINKS # DELTAG0 # DEPRESSORS # EC-LIST # EC-NUMBER # ENZYMATIC-REACTION # EQUILIBRIUM-CONSTANT # IN-PATHWAY # INHIBITORS # INSTANCE-NAME-TEMPLATE # KEY-SLOT # LEFT # MEMBER-SORT-FN # MOVED-IN # MOVED-OUT # OFFICIAL-EC? # REACTANTS # REACTION-PRESENT-IN-E-COLI? # REQUIREMENTS # RIGHT # SCHEMA # SIGNAL # SPECIES # SPONTANEOUS? # STIMULATORS # SYNONYMS

Author:

Jie Li

Constructor Summary

AracycImporter()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AracycImporter

public AracycImporter()