edu.iastate.metnet.aracyc
Class AracycInteraction

java.lang.Object
  edu.iastate.metnet.aracyc.AracycInteraction

public class AracycInteraction
extends java.lang.Object

data object for aracyc interaction

enzrxns.dat
UNIQUE-ID # TYPES # COMMON-NAME # ACTIVATORS # ACTIVATORS-ALLOSTERIC # ACTIVATORS-MECHNOTSTATED # ACTIVATORS-NONALLOSTERIC # ALTERNATIVE-COFACTORS # ALTERNATIVE-SUBSTRATES # BASIS-FOR-ASSIGNMENT # CITATIONS # COFACTOR-BINDING-COMMENT # COFACTORS # COFACTORS-OR-PROSTHETIC-GROUPS # COMMENT # DBLINKS # ENZYME # INHIBITORS # INHIBITORS-ALLOSTERIC # INHIBITORS-COMPETITIVE # INHIBITORS-MECHNOTSTATED # INHIBITORS-NEITHER # INSTANCE-NAME-TEMPLATE # KEY-SLOT # PHYSIOLOGICALLY-RELEVANT # PROSTHETIC-GROUPS # REACTION # REACTION-DIRECTION # REQUIRED-PROTEIN-COMPLEX # SYNONYMS

Author:

Jie Li

Field Summary

(package private) java.lang.String	aracycid UNIQUE-ID
(package private) java.util.ArrayList	citations CITATIONS
(package private) java.util.ArrayList	comments COMMENT # DBLINKS (CAS, TAIR, PIR, WIT-PWY, SWISSPROT, METACYC, LIGAND-CPD, NCI, LIGAND, ENTREZ, SOYBASE, SWISSMODEL, we can not predict all source of dblinks and their format, it's better to put in the comment field.)
(package private) java.util.ArrayList	leftPart ENZYME (in enzrxns.dat)
(package private) static org.apache.log4j.Logger	logger
(package private) java.lang.String	name COMMON-NAME
(package private) java.util.ArrayList	rightPart REACTION (unique-id of another interaction)
(package private) java.util.ArrayList	synonyms UNIQUE-ID # SYNONYMS

Constructor Summary

AracycInteraction()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

name

java.lang.String name

COMMON-NAME

synonyms

java.util.ArrayList synonyms

UNIQUE-ID # SYNONYMS

aracycid

java.lang.String aracycid

UNIQUE-ID

citations

java.util.ArrayList citations

CITATIONS

comments

java.util.ArrayList comments

COMMENT # DBLINKS (CAS, TAIR, PIR, WIT-PWY, SWISSPROT, METACYC, LIGAND-CPD, NCI, LIGAND, ENTREZ, SOYBASE, SWISSMODEL, we can not predict all source of dblinks and their format, it's better to put in the comment field.)

leftPart

java.util.ArrayList leftPart

ENZYME (in enzrxns.dat)

rightPart

java.util.ArrayList rightPart

REACTION (unique-id of another interaction)

Constructor Detail

AracycInteraction

public AracycInteraction()