edu.iastate.metnet.aracyc
Class ChangeName

java.lang.Object
  edu.iastate.metnet.aracyc.ChangeName

public class ChangeName
extends java.lang.Object

turn the name in our database to the common name

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger

logger

Constructor Summary

ChangeName()

Method Summary

java.lang.String	getCompoundFilename()
java.lang.String	getGeneFilename()
java.util.Map	getNameMap()
java.lang.String	getProteinFilename()
static void	main(java.lang.String[] args)
void	run()
void	setCompoundFilename(java.lang.String compoundFilename)
void	setGeneFilename(java.lang.String geneFilename)
void	setProteinFilename(java.lang.String proteinFilename)
void	updateDatabase()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

Constructor Detail

ChangeName

public ChangeName()

Method Detail

getCompoundFilename

public java.lang.String getCompoundFilename()

Returns:

Returns the compoundFilename.

setCompoundFilename

public void setCompoundFilename(java.lang.String compoundFilename)

Parameters:

compoundFilename - The compoundFilename to set.

getGeneFilename

public java.lang.String getGeneFilename()

Returns:

Returns the geneFilename.

setGeneFilename

public void setGeneFilename(java.lang.String geneFilename)

Parameters:

geneFilename - The geneFilename to set.

getProteinFilename

public java.lang.String getProteinFilename()

Returns:

Returns the proteinFilename.

setProteinFilename

public void setProteinFilename(java.lang.String proteinFilename)

Parameters:

proteinFilename - The proteinFilename to set.

main

public static void main(java.lang.String[] args)

run

public void run()

getNameMap

public java.util.Map getNameMap()

Returns:

Returns the nameMap.

updateDatabase

public void updateDatabase()