edu.iastate.metnet.aracyc
Class TabularFileReaderEx

java.lang.Object
  edu.iastate.metnet.aracyc.AbstractAracycFileReader
      edu.iastate.metnet.aracyc.TabularFileReaderEx

All Implemented Interfaces:

IAracycFileReader

public class TabularFileReaderEx
extends AbstractAracycFileReader

same as TabularFileReader except implementing the data structure by Map of MultiMap

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger

logger log4j facility

Constructor Summary

TabularFileReaderEx()

Method Summary

protected java.util.Map	parseFile(java.util.LinkedList lines) parse the file lines and get the map of multimap
java.util.Map	read(java.io.InputStream inputStream)
java.util.Map	read(java.lang.String filename) read files and get the map of multimap

Methods inherited from class edu.iastate.metnet.aracyc.AbstractAracycFileReader

getFileLines, getFileLines, print

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

Constructor Detail

TabularFileReaderEx

public TabularFileReaderEx()

Method Detail

read

public java.util.Map read(java.lang.String filename)

read files and get the map of multimap

 IAracycFileReader reader = new TabularFileReader();
 
 Map map = reader.read(filename);
 
 

Specified by:

read in interface IAracycFileReader

Overrides:

read in class AbstractAracycFileReader

Parameters:

filename - filename of the dump file,

Returns:

the data structure

read

public java.util.Map read(java.io.InputStream inputStream)

Specified by:

read in interface IAracycFileReader

Overrides:

read in class AbstractAracycFileReader

parseFile

protected java.util.Map parseFile(java.util.LinkedList lines)

parse the file lines and get the map of multimap

Parameters:

lines - the file lines

Returns:

the data structure