edu.iastate.metnet.dao
Class AbstractMultiPathwayElementNode

java.lang.Object
  edu.iastate.metnet.dao.AbstractMultiPathwayElementNode

All Implemented Interfaces:

MultiPathwayElementNode, java.io.Serializable

Direct Known Subclasses:

MultiEntityNode, MultiInteractionNode

public abstract class AbstractMultiPathwayElementNode
extends java.lang.Object
implements MultiPathwayElementNode, java.io.Serializable

pathway element nodes which holds multiple element nodes from different pathway graphs. Notice that this class cannot infer the edge relation among multi-node since it should check the global node relation

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) java.lang.String	guid guid for this object, replace the default hashCode
(package private) PathwayElementNode	leftNode define the left element node
(package private) java.util.Set	predGuidSet pred multi-node
(package private) PathwayElementNode	rightNode define the right element node
(package private) java.util.Set	succGuidSet succ multi-node

Constructor Summary

AbstractMultiPathwayElementNode()
default constructor

AbstractMultiPathwayElementNode(PathwayElementNode elementNode, PathwayElementNode elementNode2)
create a multi-node containing two nodes

Method Summary

void	addAllPredGuid(java.util.Collection guidList) add all pred node
void	addAllSuccGuid(java.util.Collection guidList) add all succ node
void	addPredGuid(java.lang.String guid) add one pred node
void	addSuccGuid(java.lang.String guid) add one succ node
java.lang.String	getGuid()
PathwayElementNode	getLeftNode()
java.lang.String	getName() used to display the name of the node
java.util.Set	getPredGuidSet()
PathwayElementNode	getRightNode()
java.util.Set	getSuccGuidSet()
void	setLeftNode(PathwayElementNode leftNode)
void	setRightNode(PathwayElementNode rightNode)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

guid

java.lang.String guid

guid for this object, replace the default hashCode

leftNode

PathwayElementNode leftNode

define the left element node

rightNode

PathwayElementNode rightNode

define the right element node

predGuidSet

java.util.Set predGuidSet

pred multi-node

succGuidSet

java.util.Set succGuidSet

succ multi-node

Constructor Detail

AbstractMultiPathwayElementNode

public AbstractMultiPathwayElementNode()

default constructor

AbstractMultiPathwayElementNode

public AbstractMultiPathwayElementNode(PathwayElementNode elementNode,
                                       PathwayElementNode elementNode2)

create a multi-node containing two nodes

Parameters:

elementNode - element node 1

elementNode2 - element node 2

Method Detail

getLeftNode

public PathwayElementNode getLeftNode()

Specified by:

getLeftNode in interface MultiPathwayElementNode

Returns:

Returns the leftNode.

setLeftNode

public void setLeftNode(PathwayElementNode leftNode)

Specified by:

setLeftNode in interface MultiPathwayElementNode

Parameters:

leftNode - The leftNode to set.

getRightNode

public PathwayElementNode getRightNode()

Specified by:

getRightNode in interface MultiPathwayElementNode

Returns:

Returns the rightNode.

setRightNode

public void setRightNode(PathwayElementNode rightNode)

Specified by:

setRightNode in interface MultiPathwayElementNode

Parameters:

rightNode - The rightNode to set.

getGuid

public java.lang.String getGuid()

Specified by:

getGuid in interface MultiPathwayElementNode

Returns:

Returns the guid.

getPredGuidSet

public java.util.Set getPredGuidSet()

Specified by:

getPredGuidSet in interface MultiPathwayElementNode

Returns:

Returns the predGuidSet.

getSuccGuidSet

public java.util.Set getSuccGuidSet()

Specified by:

getSuccGuidSet in interface MultiPathwayElementNode

Returns:

Returns the succGuidSet.

addPredGuid

public void addPredGuid(java.lang.String guid)

add one pred node

Specified by:

addPredGuid in interface MultiPathwayElementNode

Parameters:

guid - the guid of the pred node

addSuccGuid

public void addSuccGuid(java.lang.String guid)

add one succ node

Specified by:

addSuccGuid in interface MultiPathwayElementNode

Parameters:

guid - the guid of the succ node

addAllPredGuid

public void addAllPredGuid(java.util.Collection guidList)

add all pred node

Specified by:

addAllPredGuid in interface MultiPathwayElementNode

Parameters:

guidList - all guid of nodes

addAllSuccGuid

public void addAllSuccGuid(java.util.Collection guidList)

add all succ node

Specified by:

addAllSuccGuid in interface MultiPathwayElementNode

Parameters:

guidList - all guid of nodes

getName

public java.lang.String getName()

Description copied from interface: MultiPathwayElementNode

used to display the name of the node

Specified by:

getName in interface MultiPathwayElementNode

Returns:

the name

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object