edu.iastate.metnet.dao
Class AlignmentObject

java.lang.Object
  edu.iastate.metnet.dao.AlignmentObject

All Implemented Interfaces:

java.io.Serializable

public class AlignmentObject
extends java.lang.Object
implements java.io.Serializable

used to store the information of alignment over the network

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) java.util.Map	alignMap alignment
(package private) double	cost align cost
(package private) org._3pq.jgrapht.DirectedGraph	input original input
(package private) org._3pq.jgrapht.DirectedGraph	inputUsed aligned input subgraph
(package private) org._3pq.jgrapht.DirectedGraph	model original model
(package private) org._3pq.jgrapht.DirectedGraph	modelUsed aligned model subgraph
(package private) int	validSize matched non-null vertex size

Constructor Summary

AlignmentObject()

Method Summary

java.util.Map	getAlignMap()
double	getCost()
org._3pq.jgrapht.DirectedGraph	getInput()
org._3pq.jgrapht.DirectedGraph	getInputUsed()
org._3pq.jgrapht.DirectedGraph	getModel()
org._3pq.jgrapht.DirectedGraph	getModelUsed()
int	getValidSize()
void	setAlignMap(java.util.Map alignMap)
void	setCost(double cost)
void	setInput(org._3pq.jgrapht.DirectedGraph input)
void	setInputUsed(org._3pq.jgrapht.DirectedGraph inputUsed)
void	setModel(org._3pq.jgrapht.DirectedGraph model)
void	setModelUsed(org._3pq.jgrapht.DirectedGraph modelUsed)
void	setValidSize(int validSize)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

model

org._3pq.jgrapht.DirectedGraph model

original model

input

org._3pq.jgrapht.DirectedGraph input

original input

modelUsed

org._3pq.jgrapht.DirectedGraph modelUsed

aligned model subgraph

inputUsed

org._3pq.jgrapht.DirectedGraph inputUsed

aligned input subgraph

alignMap

java.util.Map alignMap

alignment

cost

double cost

align cost

validSize

int validSize

matched non-null vertex size

Constructor Detail

AlignmentObject

public AlignmentObject()

Method Detail

getAlignMap

public java.util.Map getAlignMap()

Returns:

the alignMap

setAlignMap

public void setAlignMap(java.util.Map alignMap)

Parameters:

alignMap - the alignMap to set

getCost

public double getCost()

Returns:

the cost

setCost

public void setCost(double cost)

Parameters:

cost - the cost to set

getInput

public org._3pq.jgrapht.DirectedGraph getInput()

Returns:

the input

setInput

public void setInput(org._3pq.jgrapht.DirectedGraph input)

Parameters:

input - the input to set

getInputUsed

public org._3pq.jgrapht.DirectedGraph getInputUsed()

Returns:

the inputUsed

setInputUsed

public void setInputUsed(org._3pq.jgrapht.DirectedGraph inputUsed)

Parameters:

inputUsed - the inputUsed to set

getModel

public org._3pq.jgrapht.DirectedGraph getModel()

Returns:

the model

setModel

public void setModel(org._3pq.jgrapht.DirectedGraph model)

Parameters:

model - the model to set

getModelUsed

public org._3pq.jgrapht.DirectedGraph getModelUsed()

Returns:

the modelUsed

setModelUsed

public void setModelUsed(org._3pq.jgrapht.DirectedGraph modelUsed)

Parameters:

modelUsed - the modelUsed to set

getValidSize

public int getValidSize()

Returns:

the validSize

setValidSize

public void setValidSize(int validSize)

Parameters:

validSize - the validSize to set