edu.iastate.metnet.dao
Class InteractionStructure

java.lang.Object
  edu.iastate.metnet.dao.InteractionStructure

All Implemented Interfaces:

java.io.Serializable

public class InteractionStructure
extends java.lang.Object
implements java.io.Serializable

define the comparable property of interactions

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) java.lang.Integer	ibid blockid of the interaction
(package private) boolean	isControlInteraction if it is a control interaction.
(package private) java.util.Map	leftEbidEidMap blockid of substrates
(package private) java.util.Map	rightEbidEidMap blockid of products
(package private) java.lang.String	signature signature

Constructor Summary

InteractionStructure()

Method Summary

java.util.Map	align(InteractionStructure that) generate alignment based on the entity id, i guess this should be changed to other condition for new release
boolean	equals(java.lang.Object rhs)
java.lang.Integer	getIbid()
java.util.Map	getLeftEbidEidMap()
java.util.Map	getRightEbidEidMap()
java.lang.String	getSignature()
int	hashCode()
boolean	isControlInteraction()
void	setControlInteraction(boolean isControlInteraction)
void	setIbid(java.lang.Integer ibid)
void	setSignature(java.lang.String signature)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

signature

java.lang.String signature

signature

ibid

java.lang.Integer ibid

blockid of the interaction

isControlInteraction

boolean isControlInteraction

if it is a control interaction. this is assigned by caller since it does not know the whole pathway structure

leftEbidEidMap

java.util.Map leftEbidEidMap

blockid of substrates

rightEbidEidMap

java.util.Map rightEbidEidMap

blockid of products

Constructor Detail

InteractionStructure

public InteractionStructure()

Method Detail

getIbid

public java.lang.Integer getIbid()

Returns:

Returns the ibid.

setIbid

public void setIbid(java.lang.Integer ibid)

Parameters:

ibid - The ibid to set.

isControlInteraction

public boolean isControlInteraction()

Returns:

Returns the isControlInteraction.

setControlInteraction

public void setControlInteraction(boolean isControlInteraction)

Parameters:

isControlInteraction - The isControlInteraction to set.

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(java.lang.Object rhs)

Overrides:

equals in class java.lang.Object

getSignature

public java.lang.String getSignature()

Returns:

Returns the getSignature.

setSignature

public void setSignature(java.lang.String signature)

getLeftEbidEidMap

public java.util.Map getLeftEbidEidMap()

Returns:

Returns the leftEbidEidMap.

getRightEbidEidMap

public java.util.Map getRightEbidEidMap()

Returns:

Returns the rightEBidEidMap.

align

public java.util.Map align(InteractionStructure that)

generate alignment based on the entity id, i guess this should be changed to other condition for new release

Parameters:

that - the structure of the other interaction

Returns:

the mapping among entitywithlocation