edu.iastate.metnet.dao
Class MetnetBlockUnit

java.lang.Object
  edu.iastate.metnet.dao.MetnetBlockUnit

All Implemented Interfaces:

IMetnetBlockUnit, java.io.Serializable

Direct Known Subclasses:

MetnetInteraction, MetnetLiveEntity, MetnetPathway

public abstract class MetnetBlockUnit
extends java.lang.Object
implements IMetnetBlockUnit, java.io.Serializable

general node in the graph

Since:

6/19/04

Author:

Jie Li

See Also:

Serialized Form

Field Summary

protected Blockunit	blockunit always the latest version for user interface
protected Blockunit	buffer store the original copy for reloaded user interface
protected int	ID any identify to make the node unique in the pathway graph, normally this will be blockid
(package private) static org.apache.log4j.Logger	logger log4j facility

Constructor Summary

MetnetBlockUnit()
default constuctor

MetnetBlockUnit(Blockunit blockunit)
default constructor when the blockunit is known

Method Summary

java.lang.String	getAracycID()
Blockunit	getBlockunit() get the blockunit, can be changed in the user interface
Blockunit	getBuffer() get the buffered blockunit, never touched for comparison when things are being saved
java.lang.String	getDate()
java.lang.Integer	getId() same as getID() but return object
int	getID() get the identity in the pathway graph
java.lang.String	getLocation()
java.lang.String	getName() get the name
java.lang.String	getOrganism()
java.lang.String	getSource()
java.lang.String	getType()
java.lang.String	getUsername()
abstract boolean	isPropertyChanged() detect if the content is changed, for the interaction, it means the properties, not the structure
void	setBlockunit(Blockunit blockunit) set the blockunit
void	setID(int ID) set the identity
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

buffer

protected Blockunit buffer

store the original copy for reloaded user interface

blockunit

protected Blockunit blockunit

always the latest version for user interface

ID

protected int ID

any identify to make the node unique in the pathway graph, normally this will be blockid

Constructor Detail

MetnetBlockUnit

public MetnetBlockUnit()

default constuctor

MetnetBlockUnit

public MetnetBlockUnit(Blockunit blockunit)

default constructor when the blockunit is known

Parameters:

blockunit - the blockunit

Method Detail

getID

public int getID()

Description copied from interface: IMetnetBlockUnit

get the identity in the pathway graph

Specified by:

getID in interface IMetnetBlockUnit

Returns:

the identity

getId

public java.lang.Integer getId()

Description copied from interface: IMetnetBlockUnit

same as getID() but return object

Specified by:

getId in interface IMetnetBlockUnit

Returns:

the id object

setID

public void setID(int ID)

Description copied from interface: IMetnetBlockUnit

set the identity

Specified by:

setID in interface IMetnetBlockUnit

getName

public java.lang.String getName()

Description copied from interface: IMetnetBlockUnit

get the name

Specified by:

getName in interface IMetnetBlockUnit

Returns:

the name of the blockunit

getOrganism

public java.lang.String getOrganism()

getLocation

public java.lang.String getLocation()

getUsername

public java.lang.String getUsername()

getDate

public java.lang.String getDate()

getAracycID

public java.lang.String getAracycID()

getSource

public java.lang.String getSource()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getType

public java.lang.String getType()

getBlockunit

public Blockunit getBlockunit()

Description copied from interface: IMetnetBlockUnit

get the blockunit, can be changed in the user interface

Specified by:

getBlockunit in interface IMetnetBlockUnit

Returns:

Returns the blockunit.

setBlockunit

public void setBlockunit(Blockunit blockunit)

Description copied from interface: IMetnetBlockUnit

set the blockunit

Specified by:

setBlockunit in interface IMetnetBlockUnit

Parameters:

blockunit - The blockunit to set.

getBuffer

public Blockunit getBuffer()

get the buffered blockunit, never touched for comparison when things are being saved

Specified by:

getBuffer in interface IMetnetBlockUnit

Returns:

the buffered blockunit

isPropertyChanged

public abstract boolean isPropertyChanged()

Description copied from interface: IMetnetBlockUnit

detect if the content is changed, for the interaction, it means the properties, not the structure

Specified by:

isPropertyChanged in interface IMetnetBlockUnit

Returns:

true if changed, false if not