edu.iastate.metnet.dao
Class PathwayObject

java.lang.Object
  edu.iastate.metnet.dao.PathwayObject

All Implemented Interfaces:

java.io.Serializable

public class PathwayObject
extends java.lang.Object
implements java.io.Serializable

store basic pathway information for pathway selector

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) java.util.ArrayList	entityLocationList entity location list used to filter the pathway list by locations
(package private) java.util.ArrayList	interactionSourceList data source list of all interactions in this pathway
(package private) java.util.ArrayList	interactionUserList user list of all interactions in this pathway
(package private) java.lang.String	lastModifiedDate the last modified data of the pathway
(package private) java.lang.String	name pathway name
(package private) java.lang.String	organism organism
(package private) java.lang.Integer	pbid the blockid
(package private) java.util.ArrayList	synonymList synonym list

Constructor Summary

PathwayObject()

Method Summary

java.util.ArrayList	getEntityLocationList()
java.lang.String	getEntityLocationString() return the entity location string
java.util.ArrayList	getInteractionSourceList()
java.lang.String	getInteractionSourceString() return the string representation of interaction source
java.util.ArrayList	getInteractionUserList()
java.lang.String	getInteractionUserString() return string representation of interaction user
java.lang.String	getLastModifiedDate()
java.lang.String	getName()
java.lang.String	getOrganism()
java.lang.Integer	getPbid()
java.util.ArrayList	getSynonymList()
java.lang.String	getSynonymString() return the string representation of all synonyms
void	setLastModifiedDate(java.lang.String lastModifiedDate)
void	setName(java.lang.String name)
void	setOrganism(java.lang.String organism)
void	setPbid(java.lang.Integer pbid)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

pbid

java.lang.Integer pbid

the blockid

name

java.lang.String name

pathway name

synonymList

java.util.ArrayList synonymList

synonym list

interactionSourceList

java.util.ArrayList interactionSourceList

data source list of all interactions in this pathway

entityLocationList

java.util.ArrayList entityLocationList

entity location list used to filter the pathway list by locations

interactionUserList

java.util.ArrayList interactionUserList

user list of all interactions in this pathway

lastModifiedDate

java.lang.String lastModifiedDate

the last modified data of the pathway

organism

java.lang.String organism

organism

Constructor Detail

PathwayObject

public PathwayObject()

Method Detail

getName

public java.lang.String getName()

Returns:

Returns the name.

setName

public void setName(java.lang.String name)

Parameters:

name - The name to set.

getPbid

public java.lang.Integer getPbid()

Returns:

Returns the pbid.

setPbid

public void setPbid(java.lang.Integer pbid)

Parameters:

pbid - The pbid to set.

getInteractionSourceList

public java.util.ArrayList getInteractionSourceList()

Returns:

Returns the interactionSourceList.

getInteractionUserList

public java.util.ArrayList getInteractionUserList()

Returns:

Returns the interactionUserList.

getSynonymList

public java.util.ArrayList getSynonymList()

Returns:

Returns the synonymList.

getSynonymString

public java.lang.String getSynonymString()

return the string representation of all synonyms

Returns:

string representation of all synonyms

getInteractionSourceString

public java.lang.String getInteractionSourceString()

return the string representation of interaction source

Returns:

the string representation of interaction source

getInteractionUserString

public java.lang.String getInteractionUserString()

return string representation of interaction user

Returns:

string representation of interaction user

getLastModifiedDate

public java.lang.String getLastModifiedDate()

Returns:

Returns the lastModifiedDate.

setLastModifiedDate

public void setLastModifiedDate(java.lang.String lastModifiedDate)

Parameters:

lastModifiedDate - The lastModifiedDate to set.

getEntityLocationList

public java.util.ArrayList getEntityLocationList()

Returns:

the entityLocationList

getEntityLocationString

public java.lang.String getEntityLocationString()

return the entity location string

Returns:

the entity list string

getOrganism

public java.lang.String getOrganism()

setOrganism

public void setOrganism(java.lang.String organism)