edu.iastate.metnet.datamodel.db
Class GeneImpl

java.lang.Object
  edu.iastate.metnet.datamodel.EntityImpl
      edu.iastate.metnet.datamodel.db.GeneImpl

All Implemented Interfaces:

Gene, Entity

public class GeneImpl
extends EntityImpl
implements Gene

Class implementing interface Gene

Author:

Mohammed Alabsi

Constructor Summary

GeneImpl(java.lang.String name)

Method Summary

boolean	equals(java.lang.Object obj)
java.lang.String	getAffy25kID()
java.lang.String	getAffy8kID()
java.lang.String	getAfgcID()
java.lang.String	getAracycPathway()
java.lang.String	getComment()
java.lang.String	getGeneName()
java.lang.String	getGoBiologicalProcess()
java.lang.String	getGoCellularComponent()
java.lang.String	getGoMolecularFunction()
java.lang.String	getLocusid()
java.lang.String	getMetnetLocation()
java.lang.String	getMetnetPathway()
java.lang.String	getPredictedLocation()
java.util.ArrayList<TairReference>	getReferenceList()
java.lang.String	getUniprotID()
void	setAffy25kID(java.lang.String affy25kID)
void	setAffy8kID(java.lang.String affy8kID)
void	setAfgcID(java.lang.String afgcID)
void	setAracycPathway(java.lang.String aracycPathway)
void	setComment(java.lang.String comment)
void	setGeneName(java.lang.String geneNameString)
void	setGoBiologicalProcess(java.lang.String goBiologicalProcess)
void	setGoCellularComponent(java.lang.String goCellularComponent)
void	setGoMolecularFunction(java.lang.String goMolecularFunction)
void	setLocusid(java.lang.String locusid)
void	setMetnetLocation(java.lang.String metnetLocation)
void	setMetnetPathway(java.lang.String metnetPathway)
void	setPredictedLocation(java.lang.String predictedLocation)
void	setReferenceList(java.util.ArrayList<TairReference> list)
void	setUniprotID(java.lang.String uniprotID)

Methods inherited from class edu.iastate.metnet.datamodel.EntityImpl

getAttr, getName, setAttr

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface edu.iastate.metnet.datamodel.Entity

getAttr, getName, setAttr

Constructor Detail

GeneImpl

public GeneImpl(java.lang.String name)

Method Detail

getAffy25kID

public java.lang.String getAffy25kID()

Specified by:

getAffy25kID in interface Gene

getAffy8kID

public java.lang.String getAffy8kID()

Specified by:

getAffy8kID in interface Gene

getAfgcID

public java.lang.String getAfgcID()

Specified by:

getAfgcID in interface Gene

getComment

public java.lang.String getComment()

Specified by:

getComment in interface Gene

getGoBiologicalProcess

public java.lang.String getGoBiologicalProcess()

Specified by:

getGoBiologicalProcess in interface Gene

getGoCellularComponent

public java.lang.String getGoCellularComponent()

Specified by:

getGoCellularComponent in interface Gene

getGoMolecularFunction

public java.lang.String getGoMolecularFunction()

Specified by:

getGoMolecularFunction in interface Gene

getLocusid

public java.lang.String getLocusid()

Specified by:

getLocusid in interface Gene

getMetnetLocation

public java.lang.String getMetnetLocation()

Specified by:

getMetnetLocation in interface Gene

getPredictedLocation

public java.lang.String getPredictedLocation()

Specified by:

getPredictedLocation in interface Gene

getUniprotID

public java.lang.String getUniprotID()

Specified by:

getUniprotID in interface Gene

getAracycPathway

public java.lang.String getAracycPathway()

Specified by:

getAracycPathway in interface Gene

getMetnetPathway

public java.lang.String getMetnetPathway()

Specified by:

getMetnetPathway in interface Gene

setAffy25kID

public void setAffy25kID(java.lang.String affy25kID)

Specified by:

setAffy25kID in interface Gene

setAffy8kID

public void setAffy8kID(java.lang.String affy8kID)

Specified by:

setAffy8kID in interface Gene

setAfgcID

public void setAfgcID(java.lang.String afgcID)

Specified by:

setAfgcID in interface Gene

setComment

public void setComment(java.lang.String comment)

Specified by:

setComment in interface Gene

setGoBiologicalProcess

public void setGoBiologicalProcess(java.lang.String goBiologicalProcess)

Specified by:

setGoBiologicalProcess in interface Gene

setGoCellularComponent

public void setGoCellularComponent(java.lang.String goCellularComponent)

Specified by:

setGoCellularComponent in interface Gene

setGoMolecularFunction

public void setGoMolecularFunction(java.lang.String goMolecularFunction)

Specified by:

setGoMolecularFunction in interface Gene

setLocusid

public void setLocusid(java.lang.String locusid)

Specified by:

setLocusid in interface Gene

setMetnetLocation

public void setMetnetLocation(java.lang.String metnetLocation)

Specified by:

setMetnetLocation in interface Gene

setPredictedLocation

public void setPredictedLocation(java.lang.String predictedLocation)

Specified by:

setPredictedLocation in interface Gene

setUniprotID

public void setUniprotID(java.lang.String uniprotID)

Specified by:

setUniprotID in interface Gene

setAracycPathway

public void setAracycPathway(java.lang.String aracycPathway)

Specified by:

setAracycPathway in interface Gene

setMetnetPathway

public void setMetnetPathway(java.lang.String metnetPathway)

Specified by:

setMetnetPathway in interface Gene

getGeneName

public java.lang.String getGeneName()

Specified by:

getGeneName in interface Gene

setGeneName

public void setGeneName(java.lang.String geneNameString)

Specified by:

setGeneName in interface Gene

equals

public boolean equals(java.lang.Object obj)

Specified by:

equals in interface Gene

Overrides:

equals in class java.lang.Object

setReferenceList

public void setReferenceList(java.util.ArrayList<TairReference> list)

Specified by:

setReferenceList in interface Gene

getReferenceList

public java.util.ArrayList<TairReference> getReferenceList()

Specified by:

getReferenceList in interface Gene