edu.iastate.metnet.export
Class BlockunitObjectImpl

java.lang.Object
  edu.iastate.metnet.export.BlockunitObjectImpl

All Implemented Interfaces:

BlockunitObject, java.io.Serializable

public class BlockunitObjectImpl
extends java.lang.Object
implements java.io.Serializable, BlockunitObject

See Also:

Serialized Form

Constructor Summary

BlockunitObjectImpl(Blockunit blockunit)

Method Summary

java.util.ArrayList	getAbbreviations() abbreviation list of the blockunit
java.lang.Integer	getBlockid() blockid of the blockunit
java.util.ArrayList	getComments() comment list of the blockunit
java.lang.Integer	getEntityId()
java.lang.String	getEntityType() get the entity type of the blockunit.
java.lang.Integer	getFunctionconfidence()
java.lang.String	getInteractionType()
java.lang.String	getLocation()
java.lang.Integer	getLocationconfidence()
java.lang.String	getName()
java.lang.String	getOrganism()
java.util.ArrayList	getReferences()
java.lang.String	getSource()
java.util.ArrayList	getSynonyms()
java.lang.String	getType()
java.lang.String	getUsername()
boolean	isEntity() if this is an entity
boolean	isGene() if this is a gene
boolean	isInChloroplast()
boolean	isInMitochondrion()
boolean	isInteraction()
boolean	isLocus()
boolean	isMetabolite()
boolean	isPathway()
boolean	isPolypeptide()
boolean	isProtein()
boolean	isProteinComplex()
boolean	isRNA()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlockunitObjectImpl

public BlockunitObjectImpl(Blockunit blockunit)

Method Detail

getAbbreviations

public java.util.ArrayList getAbbreviations()

Description copied from interface: BlockunitObject

abbreviation list of the blockunit

Specified by:

getAbbreviations in interface BlockunitObject

Returns:

abbreviation list

See Also:

Blockunit.getAbbreviations()

getBlockid

public java.lang.Integer getBlockid()

Description copied from interface: BlockunitObject

blockid of the blockunit

Specified by:

getBlockid in interface BlockunitObject

Returns:

blockid

See Also:

AbstractBlockunit.getBlockid()

getComments

public java.util.ArrayList getComments()

Description copied from interface: BlockunitObject

comment list of the blockunit

Specified by:

getComments in interface BlockunitObject

Returns:

comment list

See Also:

Blockunit.getComments()

getEntityType

public java.lang.String getEntityType()

Description copied from interface: BlockunitObject

get the entity type of the blockunit. If this is not an entity but an interaction or a pathway, it returns null.

Specified by:

getEntityType in interface BlockunitObject

Returns:

entity type like metabolite, gene. null if this is not an entity

See Also:

Blockunit.getEntityType()

getFunctionconfidence

public java.lang.Integer getFunctionconfidence()

Specified by:

getFunctionconfidence in interface BlockunitObject

Returns:

See Also:

Blockunit.getFunctionconfidence()

getInteractionType

public java.lang.String getInteractionType()

Specified by:

getInteractionType in interface BlockunitObject

Returns:

See Also:

Blockunit.getInteractionType()

getLocation

public java.lang.String getLocation()

Specified by:

getLocation in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getLocation()

getLocationconfidence

public java.lang.Integer getLocationconfidence()

Specified by:

getLocationconfidence in interface BlockunitObject

Returns:

See Also:

Blockunit.getLocationconfidence()

getName

public java.lang.String getName()

Specified by:

getName in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getName()

getOrganism

public java.lang.String getOrganism()

Specified by:

getOrganism in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getOrganism()

getReferences

public java.util.ArrayList getReferences()

Specified by:

getReferences in interface BlockunitObject

Returns:

See Also:

Blockunit.getReferences()

getSource

public java.lang.String getSource()

Specified by:

getSource in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getSource()

getSynonyms

public java.util.ArrayList getSynonyms()

Specified by:

getSynonyms in interface BlockunitObject

Returns:

See Also:

Blockunit.getSynonyms()

getType

public java.lang.String getType()

Specified by:

getType in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getType()

getUsername

public java.lang.String getUsername()

Specified by:

getUsername in interface BlockunitObject

Returns:

See Also:

AbstractBlockunit.getUsername()

isEntity

public boolean isEntity()

Description copied from interface: BlockunitObject

if this is an entity

Specified by:

isEntity in interface BlockunitObject

Returns:

true if it is.

See Also:

Blockunit.isEntity()

isGene

public boolean isGene()

Description copied from interface: BlockunitObject

if this is a gene

Specified by:

isGene in interface BlockunitObject

Returns:

true if it is

See Also:

Blockunit.isGene()

isInChloroplast

public boolean isInChloroplast()

Specified by:

isInChloroplast in interface BlockunitObject

Returns:

See Also:

Blockunit.isInChloroplast()

isInMitochondrion

public boolean isInMitochondrion()

Specified by:

isInMitochondrion in interface BlockunitObject

Returns:

See Also:

Blockunit.isInMitochondrion()

isInteraction

public boolean isInteraction()

Specified by:

isInteraction in interface BlockunitObject

Returns:

See Also:

Blockunit.isInteraction()

isLocus

public boolean isLocus()

Specified by:

isLocus in interface BlockunitObject

Returns:

See Also:

Blockunit.isLocus()

isMetabolite

public boolean isMetabolite()

Specified by:

isMetabolite in interface BlockunitObject

Returns:

See Also:

Blockunit.isMetabolite()

isPathway

public boolean isPathway()

Specified by:

isPathway in interface BlockunitObject

Returns:

See Also:

Blockunit.isPathway()

isPolypeptide

public boolean isPolypeptide()

Specified by:

isPolypeptide in interface BlockunitObject

Returns:

See Also:

Blockunit.isPolypeptide()

isProtein

public boolean isProtein()

Specified by:

isProtein in interface BlockunitObject

Returns:

See Also:

Blockunit.isProtein()

isProteinComplex

public boolean isProteinComplex()

Specified by:

isProteinComplex in interface BlockunitObject

Returns:

See Also:

Blockunit.isProteinComplex()

isRNA

public boolean isRNA()

Specified by:

isRNA in interface BlockunitObject

Returns:

See Also:

Blockunit.isRNA()

getEntityId

public java.lang.Integer getEntityId()

Specified by:

getEntityId in interface BlockunitObject

Returns:

See Also:

Blockunit.getEntityId()