edu.iastate.metnet.graphmodel
Class AlignmentMetaphor

java.lang.Object
  edu.iastate.metnet.graphmodel.AbstractGraphMetaphor
      edu.iastate.metnet.graphmodel.AlignmentMetaphor

All Implemented Interfaces:

IGraphMetaphor

public class AlignmentMetaphor
extends AbstractGraphMetaphor

given the alignment, metaphor the current graph view

Author:

Jie Li

Field Summary

(package private) PathwayAlignment	alignment alignment used to metaphor
(package private) static org.apache.log4j.Logger	logger log4j facility

Fields inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

DEFAULT_BACKGROUND, DEFAULT_FOREGROUND, DEFAULT_LINE_WIDTH

Constructor Summary

AlignmentMetaphor()
default constructor

Method Summary

void	run(org.jgraph.JGraph graph, java.lang.Object[] cells) apply metaphor for the graph.

Methods inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

autoSizeBox, changeEdgeColor, changeEdgeDualColor, changeEdgePattern, changeEdgeWidth, changeVertexBackgroundColor, changeVertexBorderColor, changeVertexBorderWidth, changeVertexDualColor, changeVertexForegroundColor, getEdgeType, getIncomingEdges, getIncomingNodes, getInteractionColorForEdge, getInteractionWidthForEdge, getIntersectionNodes, getLocationColorForVertex, getOutgoingEdges, getOutgoingNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

alignment

PathwayAlignment alignment

alignment used to metaphor

Constructor Detail

AlignmentMetaphor

public AlignmentMetaphor()

default constructor

Method Detail

run

public void run(org.jgraph.JGraph graph,
                java.lang.Object[] cells)

apply metaphor for the graph.

Specified by:

run in interface IGraphMetaphor

Overrides:

run in class AbstractGraphMetaphor

Parameters:

graph - the graph object

cells - the cell objects