edu.iastate.metnet.graphmodel
Class CategoryMetaphor

java.lang.Object
  edu.iastate.metnet.graphmodel.AbstractGraphMetaphor
      edu.iastate.metnet.graphmodel.CategoryMetaphor

All Implemented Interfaces:

IGraphMetaphor

public class CategoryMetaphor
extends AbstractGraphMetaphor

metaphor of pathway categroy graph

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger

logger log4j facility

Fields inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

DEFAULT_BACKGROUND, DEFAULT_FOREGROUND, DEFAULT_LINE_WIDTH

Constructor Summary

CategoryMetaphor()
default constructor

CategoryMetaphor(java.lang.Object selected)

Method Summary

void	run(org.jgraph.JGraph graph, java.lang.Object[] cells) apply the category metaphor

Methods inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

autoSizeBox, changeEdgeColor, changeEdgeDualColor, changeEdgePattern, changeEdgeWidth, changeVertexBackgroundColor, changeVertexBorderColor, changeVertexBorderWidth, changeVertexDualColor, changeVertexForegroundColor, getEdgeType, getIncomingEdges, getIncomingNodes, getInteractionColorForEdge, getInteractionWidthForEdge, getIntersectionNodes, getLocationColorForVertex, getOutgoingEdges, getOutgoingNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

Constructor Detail

CategoryMetaphor

public CategoryMetaphor()

default constructor

CategoryMetaphor

public CategoryMetaphor(java.lang.Object selected)

Method Detail

run

public void run(org.jgraph.JGraph graph,
                java.lang.Object[] cells)

apply the category metaphor

Specified by:

run in interface IGraphMetaphor

Overrides:

run in class AbstractGraphMetaphor

Parameters:

graph - the jgraph instance

cells - the selected cells or all cells