edu.iastate.metnet.graphmodel
Class GraphWalker

java.lang.Object
  edu.iastate.metnet.graphmodel.AbstractGraphProcessor
      edu.iastate.metnet.graphmodel.GraphWalker

All Implemented Interfaces:

IGraphProcessor

Direct Known Subclasses:

AdjacencyGraphWalker, GlobalGraphWalker

public abstract class GraphWalker
extends AbstractGraphProcessor

facility to traverse the graph, and run the interaction node

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger	logger log4j facility
(package private) static int	WALK_ADJCENT walk adjacent interaction nodes in each pass
(package private) static int	WALK_ALL walk all the interaction nodes in each pass
(package private) int	walkType how to walk throgh the graph model

Constructor Summary

GraphWalker()
initialize the walker, such as if walk through whole graph model or only walk through affected interaction nodes in the graph model depends on the algorithm requirement

GraphWalker(int walkType)
initialize the walker, such as if walk through whole graph model or only walk through affected interaction nodes in the graph model depends on the algorithm requirement

Method Summary

int	getWalkType()
void	run(PathwayModel model) walk through pathway model
void	setWalkType(int walkType)

Methods inherited from class edu.iastate.metnet.graphmodel.AbstractGraphProcessor

run

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

WALK_ALL

static final int WALK_ALL

walk all the interaction nodes in each pass

See Also:

Constant Field Values

WALK_ADJCENT

static final int WALK_ADJCENT

walk adjacent interaction nodes in each pass

See Also:

Constant Field Values

walkType

int walkType

how to walk throgh the graph model

Constructor Detail

GraphWalker

public GraphWalker()

initialize the walker, such as if walk through whole graph model or only walk through affected interaction nodes in the graph model depends on the algorithm requirement

GraphWalker

public GraphWalker(int walkType)

initialize the walker, such as if walk through whole graph model or only walk through affected interaction nodes in the graph model depends on the algorithm requirement

Method Detail

run

public void run(PathwayModel model)

walk through pathway model

Specified by:

run in interface IGraphProcessor

Overrides:

run in class AbstractGraphProcessor

Parameters:

model - the graph model

getWalkType

public int getWalkType()

Returns:

Returns the walkType.

setWalkType

public void setWalkType(int walkType)

Parameters:

walkType - The walkType to set.