edu.iastate.metnet.graphmodel
Class IsomorphismMetaphor

java.lang.Object
  edu.iastate.metnet.graphmodel.AbstractGraphMetaphor
      edu.iastate.metnet.graphmodel.IsomorphismMetaphor

All Implemented Interfaces:

IGraphMetaphor

public class IsomorphismMetaphor
extends AbstractGraphMetaphor

special metaphor for subgraph isomorphism

Author:

Jie Li

Field Summary

(package private) static org.apache.log4j.Logger

logger log4j facility

Fields inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

DEFAULT_BACKGROUND, DEFAULT_FOREGROUND, DEFAULT_LINE_WIDTH

Constructor Summary

IsomorphismMetaphor()
default constrcutor

IsomorphismMetaphor(AlignmentObject alignmentObject)
default constructor

Method Summary

void	run(org.jgraph.JGraph graph, java.lang.Object[] cells) highlight the alignment

Methods inherited from class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

autoSizeBox, changeEdgeColor, changeEdgeDualColor, changeEdgePattern, changeEdgeWidth, changeVertexBackgroundColor, changeVertexBorderColor, changeVertexBorderWidth, changeVertexDualColor, changeVertexForegroundColor, getEdgeType, getIncomingEdges, getIncomingNodes, getInteractionColorForEdge, getInteractionWidthForEdge, getIntersectionNodes, getLocationColorForVertex, getOutgoingEdges, getOutgoingNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

Constructor Detail

IsomorphismMetaphor

public IsomorphismMetaphor()

default constrcutor

IsomorphismMetaphor

public IsomorphismMetaphor(AlignmentObject alignmentObject)

default constructor

Parameters:

alignmentObject - alignment information

Method Detail

run

public void run(org.jgraph.JGraph graph,
                java.lang.Object[] cells)

highlight the alignment

Specified by:

run in interface IGraphMetaphor

Overrides:

run in class AbstractGraphMetaphor

Parameters:

graph - the jgraph instance

cells - the selected cells or all cells