edu.iastate.metnet.graphmodel
Class MultiPathwayModel

java.lang.Object
  org._3pq.jgrapht.graph.AbstractGraph
      org._3pq.jgrapht.graph.GraphDelegator
          org._3pq.jgrapht.graph.DefaultListenableGraph
              org._3pq.jgrapht.graph.ListenableDirectedGraph
                  edu.iastate.metnet.graphmodel.MultiPathwayModel

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, org._3pq.jgrapht.DirectedGraph, org._3pq.jgrapht.Graph, org._3pq.jgrapht.ListenableGraph

public class MultiPathwayModel
extends org._3pq.jgrapht.graph.ListenableDirectedGraph

this pathway model is used for displaying combination of multiple pathway. Thus in each graph node, there are more than one entitywithlocation or one interaction nodes. We also need special node class to hold the multi-pathway element node instances

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) MultiPathwayGraph	localGraph local copy of model of model
(package private) java.util.Map	localPathwayMap local copy of all pathway selection
(package private) static org.apache.log4j.Logger	logger log4j facility

Constructor Summary

MultiPathwayModel()
default constructor

MultiPathwayModel(java.util.Map pathwayMap)
construct the multiple pathway model based on the pathway map

Method Summary

void	applyProcessor(IGraphProcessor graphProcessor) general method for post-modification on the graph data model
MultiPathwayGraph	getLocalGraph() return the local multi-pathway graph.

Methods inherited from class org._3pq.jgrapht.graph.DefaultListenableGraph

addEdge, addEdge, addGraphListener, addVertex, addVertexSetListener, clone, fireEdgeAdded, fireEdgeRemoved, fireVertexAdded, fireVertexRemoved, isReuseEvents, removeEdge, removeEdge, removeGraphListener, removeVertex, removeVertexSetListener, setReuseEvents

Methods inherited from class org._3pq.jgrapht.graph.GraphDelegator

containsEdge, containsVertex, degreeOf, edgeSet, edgesOf, getAllEdges, getEdge, getEdgeFactory, incomingEdgesOf, inDegreeOf, outDegreeOf, outgoingEdgesOf, toString, vertexSet

Methods inherited from class org._3pq.jgrapht.graph.AbstractGraph

addAllEdges, addAllVertices, assertVertexExist, containsEdge, removeAllEdges, removeAllEdges, removeAllEdges, removeAllVertices, toStringFromSets

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org._3pq.jgrapht.DirectedGraph

incomingEdgesOf, inDegreeOf, outDegreeOf, outgoingEdgesOf

Methods inherited from interface org._3pq.jgrapht.Graph

addAllEdges, addAllVertices, addEdge, addEdge, addVertex, containsEdge, containsEdge, containsVertex, edgeSet, edgesOf, getAllEdges, getEdge, getEdgeFactory, removeAllEdges, removeAllEdges, removeAllVertices, removeEdge, removeEdge, removeVertex, vertexSet

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

localPathwayMap

java.util.Map localPathwayMap

local copy of all pathway selection

localGraph

MultiPathwayGraph localGraph

local copy of model of model

Constructor Detail

MultiPathwayModel

public MultiPathwayModel()

default constructor

MultiPathwayModel

public MultiPathwayModel(java.util.Map pathwayMap)

construct the multiple pathway model based on the pathway map

Parameters:

pathwayMap - the map of pathway blockid and name

Method Detail

getLocalGraph

public MultiPathwayGraph getLocalGraph()

return the local multi-pathway graph. Notice that it is totally a local copy, not corresponding to any element node in the display

Returns:

Returns the localGraph.

applyProcessor

public void applyProcessor(IGraphProcessor graphProcessor)

general method for post-modification on the graph data model

Parameters:

graphProcessor - the post-modification processor