edu.iastate.metnet.hiveface
Interface AtGeneSearchObject

All Known Implementing Classes:

AtGeneSearchObjectImpl

public interface AtGeneSearchObject

store the Arabidopsis annnotation

Author:

Jie Li

See Also:

GraphExporter.getAtGeneSearchObject(String)

Method Summary

java.lang.String	getAffy25kID() get the list of affy25k id
java.util.ArrayList	getAffy25kidList()
java.lang.String	getAffy8kID() get the list of affy8k id
java.util.ArrayList	getAffy8kidList()
java.lang.String	getAfgcID() get the list of afgc id
java.util.ArrayList	getAfgcidList()
java.lang.String	getAgrisActivedBy() get the list of activated by locus list
java.util.ArrayList	getAgrisActivedByList()
java.lang.String	getAgrisActives() get the list of activates locus list
java.util.ArrayList	getAgrisActivesList()
java.lang.String	getAgrisAffectedBy() get the affected by locus list
java.util.ArrayList	getAgrisAffectedByList()
java.lang.String	getAgrisAffects() get the affects locus list
java.util.ArrayList	getAgrisAffectsList()
java.lang.String	getAgrisReference() get the agris reference
java.util.ArrayList	getAgrisReferenceList()
java.lang.String	getAgrisRepressedBy() get the repressed by locus list
java.util.ArrayList	getAgrisRepressedByList()
java.lang.String	getAgrisRepresses() get the represses locus list
java.util.ArrayList	getAgrisRepressesList()
java.lang.String	getAracycPathway() get the list of aracyc pathway
java.util.ArrayList	getAracycPathwayList()
java.lang.String	getComment() get the list of comment
java.util.ArrayList	getCommentList()
java.lang.String	getGeneName() get gene name list
java.util.ArrayList	getGeneNameList()
java.lang.String	getGoBiologicalProcess() get the list of biological process
java.util.ArrayList	getGoBiologicalProcessList()
java.lang.String	getGoCellularComponent() get the list of cellular component
java.util.ArrayList	getGoCellularComponentList()
java.lang.String	getGoMolecularFunction() get the list of molecular function
java.util.ArrayList	getGoMolecularFunctionList()
java.util.Map	getLocationConfideceMap()
java.lang.String	getLocationConfidence(java.lang.String location)
java.lang.String	getLocusid() get the locus id
java.lang.String	getMapmanBinId()
java.util.ArrayList	getMapmanBinIdList()
java.lang.String	getMapmanCategory()
java.util.ArrayList	getMapmanCategoryList()
java.lang.String	getMapmanDescription()
java.util.ArrayList	getMapmanDescriptionList()
java.lang.String	getMetnetLocation() get the list of metnet location
java.util.ArrayList	getMetnetLocationList()
java.lang.String	getMetnetPathway() get the list of metnet pathway
java.util.ArrayList	getMetnetPathwayList()
java.lang.String	getPredictedLocation() get predicted location
java.util.ArrayList	getReferenceList() get the TAIR reference information
java.util.ArrayList	getTairAnnotationList()
java.lang.String	getUniprotID() get the uniprot id list separated by semicolon
java.util.ArrayList	getUniprotidList()

Method Detail

getComment

java.lang.String getComment()

get the list of comment

Returns:

the list of comment

getAfgcID

java.lang.String getAfgcID()

get the list of afgc id

Returns:

the list of afgc id

getGeneName

java.lang.String getGeneName()

get gene name list

Returns:

the synonym of locus

getAffy25kID

java.lang.String getAffy25kID()

get the list of affy25k id

Returns:

the list of affy25k id

getAffy8kID

java.lang.String getAffy8kID()

get the list of affy8k id

Returns:

the list of affy8k id

getMetnetPathway

java.lang.String getMetnetPathway()

get the list of metnet pathway

Returns:

the list of metnet pathway

getAracycPathway

java.lang.String getAracycPathway()

get the list of aracyc pathway

Returns:

the list of aracyc pathway

getGoBiologicalProcess

java.lang.String getGoBiologicalProcess()

get the list of biological process

Returns:

the list of biological process

getGoMolecularFunction

java.lang.String getGoMolecularFunction()

get the list of molecular function

Returns:

the list of molecular function

getGoCellularComponent

java.lang.String getGoCellularComponent()

get the list of cellular component

Returns:

the list of cellular component

getUniprotID

java.lang.String getUniprotID()

get the uniprot id list separated by semicolon

Returns:

the uniprot ids

getLocusid

java.lang.String getLocusid()

get the locus id

Returns:

Returns the locusid.

getMetnetLocation

java.lang.String getMetnetLocation()

get the list of metnet location

Returns:

Returns the list of metnetLocation.

getPredictedLocation

java.lang.String getPredictedLocation()

get predicted location

Returns:

Returns the predictedLocation.

getMetnetLocationList

java.util.ArrayList getMetnetLocationList()

Returns:

the metnetLocationList

getAffy25kidList

java.util.ArrayList getAffy25kidList()

Returns:

the affy25kidList

getAffy8kidList

java.util.ArrayList getAffy8kidList()

Returns:

the affy8kidList

getAfgcidList

java.util.ArrayList getAfgcidList()

Returns:

the afgcidList

getAracycPathwayList

java.util.ArrayList getAracycPathwayList()

Returns:

the aracycPathwayList

getCommentList

java.util.ArrayList getCommentList()

Returns:

the commentList

getGeneNameList

java.util.ArrayList getGeneNameList()

Returns:

the geneNameList

getGoBiologicalProcessList

java.util.ArrayList getGoBiologicalProcessList()

Returns:

the goBiologicalProcessList

getGoCellularComponentList

java.util.ArrayList getGoCellularComponentList()

Returns:

the goCellularComponentList

getGoMolecularFunctionList

java.util.ArrayList getGoMolecularFunctionList()

Returns:

the goMolecularFunctionList

getMetnetPathwayList

java.util.ArrayList getMetnetPathwayList()

Returns:

the metnetPathwayList

getTairAnnotationList

java.util.ArrayList getTairAnnotationList()

Returns:

the tairAnnotationList

getUniprotidList

java.util.ArrayList getUniprotidList()

Returns:

the uniprotidList

getMapmanBinId

java.lang.String getMapmanBinId()

Returns:

the mapmanBinId

getMapmanCategory

java.lang.String getMapmanCategory()

Returns:

the mapmanCategory

getMapmanDescription

java.lang.String getMapmanDescription()

Returns:

the mapmanDescription

getMapmanBinIdList

java.util.ArrayList getMapmanBinIdList()

Returns:

the mapmanBinId

getMapmanCategoryList

java.util.ArrayList getMapmanCategoryList()

Returns:

the mapmanCategory

getMapmanDescriptionList

java.util.ArrayList getMapmanDescriptionList()

Returns:

the mapmanDescription

getLocationConfidence

java.lang.String getLocationConfidence(java.lang.String location)

Returns:

the location confidence

getLocationConfideceMap

java.util.Map getLocationConfideceMap()

Returns:

the locationConfideceMap

getAgrisActives

java.lang.String getAgrisActives()

get the list of activates locus list

Returns:

the activates locus list

getAgrisActivedBy

java.lang.String getAgrisActivedBy()

get the list of activated by locus list

Returns:

the activated by locus list

getAgrisRepresses

java.lang.String getAgrisRepresses()

get the represses locus list

Returns:

the represses locus list

getAgrisRepressedBy

java.lang.String getAgrisRepressedBy()

get the repressed by locus list

Returns:

the repressed by locus list

getAgrisAffects

java.lang.String getAgrisAffects()

get the affects locus list

Returns:

the affects locus list

getAgrisAffectedBy

java.lang.String getAgrisAffectedBy()

get the affected by locus list

Returns:

the affected by locus list

getAgrisReference

java.lang.String getAgrisReference()

get the agris reference

Returns:

the agris reference

getAgrisActivedByList

java.util.ArrayList getAgrisActivedByList()

Returns:

the agrisActivedByList

getAgrisActivesList

java.util.ArrayList getAgrisActivesList()

Returns:

the agrisActivesList

getAgrisAffectedByList

java.util.ArrayList getAgrisAffectedByList()

Returns:

the agrisAffectedByList

getAgrisAffectsList

java.util.ArrayList getAgrisAffectsList()

Returns:

the agrisAffectsList

getAgrisReferenceList

java.util.ArrayList getAgrisReferenceList()

Returns:

the agrisReferenceList

getAgrisRepressedByList

java.util.ArrayList getAgrisRepressedByList()

Returns:

the agrisRepressedByList

getAgrisRepressesList

java.util.ArrayList getAgrisRepressesList()

Returns:

the agrisRepressesList

getReferenceList

java.util.ArrayList getReferenceList()

get the TAIR reference information

Returns:

TAIR refence information

See Also:

TairReference