edu.iastate.metnet.hiveface
Interface BlockunitObject

All Known Implementing Classes:

BlockunitObjectImpl

public interface BlockunitObject

Method Summary

java.util.ArrayList	getAbbreviations() abbreviation list of the blockunit
java.lang.Integer	getBlockid() blockid of the blockunit
java.util.ArrayList	getComments() comment list of the blockunit
java.lang.Integer	getEntityId()
java.lang.String	getEntityType() get the entity type of the blockunit.
java.lang.Integer	getFunctionconfidence()
java.lang.String	getInteractionType()
java.lang.String	getLocation()
java.lang.Integer	getLocationconfidence()
java.lang.String	getName()
java.lang.String	getOrganism()
java.util.ArrayList	getReferences()
java.lang.String	getSource()
java.util.ArrayList	getSynonyms()
java.lang.String	getType()
java.lang.String	getUsername()
boolean	isEntity() if this is an entity
boolean	isGene() if this is a gene
boolean	isInChloroplast()
boolean	isInMitochondrion()
boolean	isInteraction()
boolean	isLocus()
boolean	isMetabolite()
boolean	isPathway()
boolean	isPolypeptide()
boolean	isProtein()
boolean	isProteinComplex()
boolean	isRNA()

Method Detail

getAbbreviations

java.util.ArrayList getAbbreviations()

abbreviation list of the blockunit

Returns:

abbreviation list

See Also:

Blockunit.getAbbreviations()

getBlockid

java.lang.Integer getBlockid()

blockid of the blockunit

Returns:

blockid

See Also:

AbstractBlockunit.getBlockid()

getComments

java.util.ArrayList getComments()

comment list of the blockunit

Returns:

comment list

See Also:

Blockunit.getComments()

getEntityType

java.lang.String getEntityType()

get the entity type of the blockunit. If this is not an entity but an interaction or a pathway, it returns null.

Returns:

entity type like metabolite, gene. null if this is not an entity

See Also:

Blockunit.getEntityType()

getFunctionconfidence

java.lang.Integer getFunctionconfidence()

Returns:

See Also:

Blockunit.getFunctionconfidence()

getInteractionType

java.lang.String getInteractionType()

Returns:

See Also:

Blockunit.getInteractionType()

getLocation

java.lang.String getLocation()

Returns:

See Also:

AbstractBlockunit.getLocation()

getLocationconfidence

java.lang.Integer getLocationconfidence()

Returns:

See Also:

Blockunit.getLocationconfidence()

getName

java.lang.String getName()

Returns:

See Also:

AbstractBlockunit.getName()

getOrganism

java.lang.String getOrganism()

Returns:

See Also:

AbstractBlockunit.getOrganism()

getReferences

java.util.ArrayList getReferences()

Returns:

See Also:

Blockunit.getReferences()

getSource

java.lang.String getSource()

Returns:

See Also:

AbstractBlockunit.getSource()

getSynonyms

java.util.ArrayList getSynonyms()

Returns:

See Also:

Blockunit.getSynonyms()

getType

java.lang.String getType()

Returns:

See Also:

AbstractBlockunit.getType()

getUsername

java.lang.String getUsername()

Returns:

See Also:

AbstractBlockunit.getUsername()

isEntity

boolean isEntity()

if this is an entity

Returns:

true if it is.

See Also:

Blockunit.isEntity()

isGene

boolean isGene()

if this is a gene

Returns:

true if it is

See Also:

Blockunit.isGene()

isInChloroplast

boolean isInChloroplast()

Returns:

See Also:

Blockunit.isInChloroplast()

isInMitochondrion

boolean isInMitochondrion()

Returns:

See Also:

Blockunit.isInMitochondrion()

isInteraction

boolean isInteraction()

Returns:

See Also:

Blockunit.isInteraction()

isLocus

boolean isLocus()

Returns:

See Also:

Blockunit.isLocus()

isMetabolite

boolean isMetabolite()

Returns:

See Also:

Blockunit.isMetabolite()

isPathway

boolean isPathway()

Returns:

See Also:

Blockunit.isPathway()

isPolypeptide

boolean isPolypeptide()

Returns:

See Also:

Blockunit.isPolypeptide()

isProtein

boolean isProtein()

Returns:

See Also:

Blockunit.isProtein()

isProteinComplex

boolean isProteinComplex()

Returns:

See Also:

Blockunit.isProteinComplex()

isRNA

boolean isRNA()

Returns:

See Also:

Blockunit.isRNA()

getEntityId

java.lang.Integer getEntityId()

Returns:

See Also:

Blockunit.getEntityId()