edu.iastate.metnet.hivetest
Class GraphExporterTest

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          edu.iastate.metnet.hivetest.GraphExporterTest

All Implemented Interfaces:

junit.framework.Test

public class GraphExporterTest
extends junit.framework.TestCase

test case for graph exporter

Author:

Jie Li

Constructor Summary

GraphExporterTest(java.lang.String arg0)
default constructor

Method Summary

void	testAtGeneSearchObject5()
void	testBevGetAllLocationInfo() test BirdsEyeView functions
void	testBevGetGoBioProcesses() test BirdsEyeView functions
void	testBevGetGoChildren() test BirdsEyeView functions
void	testBevGetGoFunctions() test BirdsEyeView functions
void	testBevGetGoGeneProductID() test BirdsEyeView functions
void	testBevGetGoNodeName() test BirdsEyeView functions
void	testBevGetGoNodesWithinDistance() test BirdsEyeView functions
void	testBevGetGoTermAncestors() test BirdsEyeView functions
void	testBevGetLocations() test BirdsEyeView functions
void	testBevGetLocusIDs() test BirdsEyeView functions
void	testBevGetMetnetEntityID() test BirdsEyeView functions
void	testBevGetPathways() test BirdsEyeView functions
void	testBevGetPolypeptides() test BirdsEyeView functions
void	testBevGetProteinComplexes() test BirdsEyeView functions
void	testGetAllLocation() test to get the subcellular compartment list
void	testGetAtGeneSearchAttributeList() Test method for 'getAtGeneSearchAttributeList()'
void	testGetAtGeneSearchObject() Test method for 'getAtGeneSearchObject()'
void	testGetAtGeneSearchObject2() Test method for 'getAtGeneSearchObject()'
void	testGetAtGeneSearchObject3() Test method for 'getAtGeneSearchObject()'
void	testGetAtGeneSearchObject4() Test method for 'getAtGeneSearchObject()'
void	testGetBlockunit() test to get the blockunit object
void	testGetComplex4Component() test the p-neighborhood graph.
void	testGetFullGeneAnnotationList() test time used for retrieve 1000 atgenesearch object
void	testGetGraphModelByEntity() Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntity(GobiNode)'
void	testGetGraphModelByEntityList() Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntityList(ArrayList)'
void	testGetGraphModelMapByEntityList() Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntityList(ArrayList)'
void	testGetLocation4Entity() test to get the subcelllar location
void	testGetMetaboliteMap() test the metabolite id and name map
void	testGetMetaboliteObject() test to get the metabolite object.
void	testGetPathwayElementMap() test the pathway element mapping
void	testGetPathwayInfo() test the pathway information retrieve function
void	testGetPathwayLocusMap() test the pathway locus mapping
void	testGetPathwayMetaboliteMap() test the pathway metabolite mapping
void	testGetPolypeptide4Gene() test the p-neighborhood graph.
void	testJ2EEconnection() test the J2EE connection
void	testPathwayCategory() test the feature to extract the information pathway category
void	testPubchemCasFilter() test to get cas from pubchem synonym.
void	testPubchemCid2Name() test to get pubchem name.
void	testPubchemName2Cid() test to get pubchem cid.

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, setUp, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GraphExporterTest

public GraphExporterTest(java.lang.String arg0)

default constructor

Parameters:

arg0 - any thing

Method Detail

testGetGraphModelByEntity

public void testGetGraphModelByEntity()

Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntity(GobiNode)'

testGetAtGeneSearchAttributeList

public void testGetAtGeneSearchAttributeList()

Test method for 'getAtGeneSearchAttributeList()'

testGetAtGeneSearchObject

public void testGetAtGeneSearchObject()

Test method for 'getAtGeneSearchObject()'

testAtGeneSearchObject5

public void testAtGeneSearchObject5()

testGetAtGeneSearchObject2

public void testGetAtGeneSearchObject2()

Test method for 'getAtGeneSearchObject()'

testGetAtGeneSearchObject3

public void testGetAtGeneSearchObject3()

Test method for 'getAtGeneSearchObject()'

testGetAtGeneSearchObject4

public void testGetAtGeneSearchObject4()

Test method for 'getAtGeneSearchObject()'

testGetGraphModelByEntityList

public void testGetGraphModelByEntityList()

Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntityList(ArrayList)'

testGetGraphModelMapByEntityList

public void testGetGraphModelMapByEntityList()

Test method for 'edu.iastate.metnet.hiveface.GraphExporter.getGraphModelByEntityList(ArrayList)'

testJ2EEconnection

public void testJ2EEconnection()

test the J2EE connection

testPathwayCategory

public void testPathwayCategory()

test the feature to extract the information pathway category

testGetMetaboliteObject

public void testGetMetaboliteObject()

test to get the metabolite object. If the database update break this case, just change the code again.

testPubchemName2Cid

public void testPubchemName2Cid()

test to get pubchem cid. If the database update break this case, just change the code again.

testPubchemCid2Name

public void testPubchemCid2Name()

test to get pubchem name. If the database update break this case, just change the code again.

testPubchemCasFilter

public void testPubchemCasFilter()

test to get cas from pubchem synonym. If the database update break this case, just change the code again.

testGetPathwayInfo

public void testGetPathwayInfo()

test the pathway information retrieve function

testGetPolypeptide4Gene

public void testGetPolypeptide4Gene()

test the p-neighborhood graph. gene-transcription-rna-translation-polypeptide (0-1-2-3-4), p=4. (if plus transportation-polypeptide, p = 6)

testGetComplex4Component

public void testGetComplex4Component()

test the p-neighborhood graph. component-composition-complex (0-1-2), p =2

testGetLocation4Entity

public void testGetLocation4Entity()

test to get the subcelllar location

testGetAllLocation

public void testGetAllLocation()

test to get the subcellular compartment list

testGetBlockunit

public void testGetBlockunit()

test to get the blockunit object

testGetPathwayElementMap

public void testGetPathwayElementMap()

test the pathway element mapping

testGetPathwayLocusMap

public void testGetPathwayLocusMap()

test the pathway locus mapping

testGetPathwayMetaboliteMap

public void testGetPathwayMetaboliteMap()

test the pathway metabolite mapping

testGetMetaboliteMap

public void testGetMetaboliteMap()

test the metabolite id and name map

testBevGetAllLocationInfo

public void testBevGetAllLocationInfo()

test BirdsEyeView functions

testBevGetGoBioProcesses

public void testBevGetGoBioProcesses()

test BirdsEyeView functions

testBevGetGoChildren

public void testBevGetGoChildren()

test BirdsEyeView functions

testBevGetGoFunctions

public void testBevGetGoFunctions()

test BirdsEyeView functions

testBevGetGoGeneProductID

public void testBevGetGoGeneProductID()

test BirdsEyeView functions

testBevGetGoNodeName

public void testBevGetGoNodeName()

test BirdsEyeView functions

testBevGetGoNodesWithinDistance

public void testBevGetGoNodesWithinDistance()

test BirdsEyeView functions

testBevGetGoTermAncestors

public void testBevGetGoTermAncestors()

test BirdsEyeView functions

testBevGetLocations

public void testBevGetLocations()

test BirdsEyeView functions

testBevGetLocusIDs

public void testBevGetLocusIDs()

test BirdsEyeView functions

testBevGetMetnetEntityID

public void testBevGetMetnetEntityID()

test BirdsEyeView functions

testBevGetPathways

public void testBevGetPathways()

test BirdsEyeView functions

testBevGetPolypeptides

public void testBevGetPolypeptides()

test BirdsEyeView functions

testBevGetProteinComplexes

public void testBevGetProteinComplexes()

test BirdsEyeView functions

testGetFullGeneAnnotationList

public void testGetFullGeneAnnotationList()

test time used for retrieve 1000 atgenesearch object