edu.iastate.metnet.ui
Class AddInteractionForm

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  edu.iastate.metnet.ui.AbstractMetnetWindow
                      edu.iastate.metnet.ui.AddInteractionForm

All Implemented Interfaces:

VersionListener, IMetnetWindow, java.awt.event.ContainerListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible

public class AddInteractionForm
extends AbstractMetnetWindow
implements VersionListener, java.awt.event.ContainerListener, java.awt.event.KeyListener

Main window for edit interaction

Author:

Jie Li

See Also:

AddEntityForm, AddPathwayForm, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

(package private) javax.swing.DefaultCellEditor	cellEditorCoefficient change the cell editor of the coefficient which will use a text field (default?)
(package private) javax.swing.DefaultCellEditor	cellEditorEntityType chage the cell editor of the entitytype column which will use combobox
(package private) javax.swing.DefaultCellEditor	cellEditorLocation change the cell editor of the substrate table ad product table, this is for the location column which will use combobix
(package private) CodelocationListModel	codelocationListModel location list model
(package private) int	COLUMN_COEFFICIENT coefficient column
(package private) int	COLUMN_ENTITYTYPE entity type column
(package private) int	COLUMN_LOCATION location column
(package private) int	COLUMN_NAME column order number of the interaction parts
(package private) java.lang.String	ebid ebid
(package private) java.lang.String	entityId blockid of entity?
(package private) com.jgoodies.binding.list.ArrayListModel	entityList entity list for the entity table, which support the finer-grained change event in list
(package private) java.lang.String	enzymeType entity type of the enzyme, may polypeptide or protein complex so when insert the enzyme, program know if the enzyme exists already based on the name,entitytype and the location
(package private) java.lang.String	ibid blockid of the interaction
(package private) com.jgoodies.binding.list.ArrayListModel	leftList from part of the interaction
(package private) static org.apache.log4j.Logger	logger log4j facility
(package private) int	partChoice indicate which part table (from or to) that user are working on, so when the user click the removePart button, program know remove which selection.
(package private) java.lang.String	pbid blockid of the pathway
(package private) java.sql.ResultSet	resultSet resultset from database
(package private) com.jgoodies.binding.list.ArrayListModel	rightList to part of the interaction
(package private) java.lang.String	sql sql string
(package private) java.sql.Statement	statement statement for database
(package private) java.lang.Integer	templateRecordId current template interaction's version id

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AddInteractionForm()
constrcutor, initialize the layout of the main window and data model of the controls

Method Summary

void	componentAdded(java.awt.event.ContainerEvent e) perform the component add event
void	componentRemoved(java.awt.event.ContainerEvent e) perform the component remove event
void	keyPressed(java.awt.event.KeyEvent e) perform the press event
void	keyReleased(java.awt.event.KeyEvent e) perform the release event
void	keyTyped(java.awt.event.KeyEvent e)
void	queryReactionByID(java.lang.String reactionID) get the reaction information and update the main window based on the BlockID of the interaction
void	receivePathway(java.util.HashMap pathwayMap) get the pathway's BlocID and list it in the the pathway table
void	receiveReactionID(java.lang.String reactionID, boolean pickupOnly) get the BlockID from Edit Entity window or Edit Pathway window and show all the information of the specified interaction.
void	receiveVersionDataObject(java.lang.Object versionDataObject) handle the version data update

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

entityList

com.jgoodies.binding.list.ArrayListModel entityList

entity list for the entity table, which support the finer-grained change event in list

leftList

com.jgoodies.binding.list.ArrayListModel leftList

from part of the interaction

rightList

com.jgoodies.binding.list.ArrayListModel rightList

to part of the interaction

COLUMN_NAME

final int COLUMN_NAME

column order number of the interaction parts

See Also:

Constant Field Values

COLUMN_ENTITYTYPE

final int COLUMN_ENTITYTYPE

entity type column

See Also:

Constant Field Values

COLUMN_LOCATION

final int COLUMN_LOCATION

location column

See Also:

Constant Field Values

COLUMN_COEFFICIENT

final int COLUMN_COEFFICIENT

coefficient column

See Also:

Constant Field Values

codelocationListModel

CodelocationListModel codelocationListModel

location list model

sql

java.lang.String sql

sql string

statement

java.sql.Statement statement

statement for database

resultSet

java.sql.ResultSet resultSet

resultset from database

pbid

java.lang.String pbid

blockid of the pathway

ibid

java.lang.String ibid

blockid of the interaction

entityId

java.lang.String entityId

blockid of entity?

ebid

java.lang.String ebid

ebid

templateRecordId

java.lang.Integer templateRecordId

current template interaction's version id

enzymeType

java.lang.String enzymeType

entity type of the enzyme, may polypeptide or protein complex so when insert the enzyme, program know if the enzyme exists already based on the name,entitytype and the location

cellEditorLocation

javax.swing.DefaultCellEditor cellEditorLocation

change the cell editor of the substrate table ad product table, this is for the location column which will use combobix

cellEditorCoefficient

javax.swing.DefaultCellEditor cellEditorCoefficient

change the cell editor of the coefficient which will use a text field (default?)

cellEditorEntityType

javax.swing.DefaultCellEditor cellEditorEntityType

chage the cell editor of the entitytype column which will use combobox

partChoice

int partChoice

indicate which part table (from or to) that user are working on, so when the user click the removePart button, program know remove which selection. = 1 represents the from part of the interaction, = 2 represents the to part of the interaction

Constructor Detail

AddInteractionForm

public AddInteractionForm()

constrcutor, initialize the layout of the main window and data model of the controls

Method Detail

queryReactionByID

public void queryReactionByID(java.lang.String reactionID)

get the reaction information and update the main window based on the BlockID of the interaction

Parameters:

reactionID - the BlockID of the interaction

componentAdded

public void componentAdded(java.awt.event.ContainerEvent e)

perform the component add event

Specified by:

componentAdded in interface java.awt.event.ContainerListener

componentRemoved

public void componentRemoved(java.awt.event.ContainerEvent e)

perform the component remove event

Specified by:

componentRemoved in interface java.awt.event.ContainerListener

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

perform the press event

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

perform the release event

Specified by:

keyReleased in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Specified by:

keyTyped in interface java.awt.event.KeyListener

receiveVersionDataObject

public void receiveVersionDataObject(java.lang.Object versionDataObject)

handle the version data update

Specified by:

receiveVersionDataObject in interface VersionListener

receiveReactionID

public void receiveReactionID(java.lang.String reactionID,
                              boolean pickupOnly)

get the BlockID from Edit Entity window or Edit Pathway window and show all the information of the specified interaction. If only pick up the substrates, then only catalyst, substrates and products will be changed.

Parameters:

reactionID - the BlockID of the interaction specified by users in the Edit Pathway window

pickupOnly - if only update the substrates and products

receivePathway

public void receivePathway(java.util.HashMap pathwayMap)

get the pathway's BlocID and list it in the the pathway table

Specified by:

receivePathway in interface IMetnetWindow

Overrides:

receivePathway in class AbstractMetnetWindow

Parameters:

pathwayMap - the list of pathway ID and name