edu.iastate.metnet.ui
Class AddPathwayForm

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  edu.iastate.metnet.ui.AbstractMetnetWindow
                      edu.iastate.metnet.ui.AddPathwayForm

All Implemented Interfaces:

VersionListener, IMetnetWindow, java.awt.event.ContainerListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible

public class AddPathwayForm
extends AbstractMetnetWindow
implements VersionListener, java.awt.event.ContainerListener, java.awt.event.KeyListener

create and edit the pathway information like name, source

Author:

Jie Li

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

(package private) int	both dummy swing
(package private) int	center dummy swing
(package private) java.awt.Insets	insets dummy swing
(package private) static org.apache.log4j.Logger	logger log4j facility
(package private) java.util.Set	pbidSet select pathway list for template
(package private) java.sql.ResultSet	resultSet result set
(package private) java.lang.String	sql SQL statement
(package private) java.sql.Statement	statement SQL statement

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AddPathwayForm()
new window for editing pathway information

Method Summary

void	componentAdded(java.awt.event.ContainerEvent e) perform the component add event
void	componentRemoved(java.awt.event.ContainerEvent e) perform the component remove event
AddPathwayController	getAddPathwayController()
java.util.Set	getPbidSet()
java.util.Map	getSpeciesMap() store the pathway species
java.lang.String	getSwingValue(java.lang.String key)
java.lang.Integer	getTemplateRecordId()
boolean	isIdenticalSpecies() detect if the pathway map and current ready-to-insert pathway are same species.
void	keyPressed(java.awt.event.KeyEvent e) perform the press event
void	keyReleased(java.awt.event.KeyEvent e) perform the release event
void	keyTyped(java.awt.event.KeyEvent e)
void	queryPathway(java.lang.String name) query the pathway(s) based on the partial name
void	queryPathwayByID(java.lang.String pid)
void	receivePathway(java.util.HashMap pathwayMap) receive the selection and update the current interaction list
void	receiveVersionDataObject(java.lang.Object versionDataObject) handle the version data update
void	setAddPathwayController(AddPathwayController addPathwayController)
void	setPbidSet(java.util.Set pathwaySet)
void	setSwingValue(java.lang.String key, java.lang.String value)
void	setTemplateRecordId(java.lang.Integer templateRecordId)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

static org.apache.log4j.Logger logger

log4j facility

both

final int both

dummy swing

See Also:

Constant Field Values

center

final int center

dummy swing

See Also:

Constant Field Values

insets

final java.awt.Insets insets

dummy swing

pbidSet

java.util.Set pbidSet

select pathway list for template

resultSet

java.sql.ResultSet resultSet

result set

sql

java.lang.String sql

SQL statement

statement

java.sql.Statement statement

SQL statement

Constructor Detail

AddPathwayForm

public AddPathwayForm()

new window for editing pathway information

Method Detail

componentAdded

public void componentAdded(java.awt.event.ContainerEvent e)

perform the component add event

Specified by:

componentAdded in interface java.awt.event.ContainerListener

componentRemoved

public void componentRemoved(java.awt.event.ContainerEvent e)

perform the component remove event

Specified by:

componentRemoved in interface java.awt.event.ContainerListener

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

perform the press event

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

perform the release event

Specified by:

keyReleased in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Specified by:

keyTyped in interface java.awt.event.KeyListener

receiveVersionDataObject

public void receiveVersionDataObject(java.lang.Object versionDataObject)

handle the version data update

Specified by:

receiveVersionDataObject in interface VersionListener

isIdenticalSpecies

public boolean isIdenticalSpecies()

detect if the pathway map and current ready-to-insert pathway are same species. This is used for calling different pathway copy functions since for different species, we can only copy metabolite related interactions. The genes and gene products should never be copied.

Returns:

true if identical, false if not.

getAddPathwayController

public AddPathwayController getAddPathwayController()

Returns:

Returns the addPathwayController.

getSwingValue

public java.lang.String getSwingValue(java.lang.String key)

queryPathway

public void queryPathway(java.lang.String name)

query the pathway(s) based on the partial name

Parameters:

name - the partial name of the pathway

queryPathwayByID

public void queryPathwayByID(java.lang.String pid)

receivePathway

public void receivePathway(java.util.HashMap pathwayMap)

receive the selection and update the current interaction list

Specified by:

receivePathway in interface IMetnetWindow

Overrides:

receivePathway in class AbstractMetnetWindow

Parameters:

pathwayMap - the map of pathwayID=>pathwayName

setAddPathwayController

public void setAddPathwayController(AddPathwayController addPathwayController)

Parameters:

addPathwayController - The addPathwayController to set.

setSwingValue

public void setSwingValue(java.lang.String key,
                          java.lang.String value)

getPbidSet

public java.util.Set getPbidSet()

Returns:

Returns the pathwaySet.

setPbidSet

public void setPbidSet(java.util.Set pathwaySet)

Parameters:

pathwaySet - The pathwaySet to set.

getTemplateRecordId

public java.lang.Integer getTemplateRecordId()

Returns:

the templateRecordId

setTemplateRecordId

public void setTemplateRecordId(java.lang.Integer templateRecordId)

Parameters:

templateRecordId - the templateRecordId to set

getSpeciesMap

public java.util.Map getSpeciesMap()

store the pathway species

Returns:

the pathway species