fcmodeler.pathbinder
Class FilterUpdater

java.lang.Object
  edu.iastate.jtm.gui.DefaultMonitorable
      fcmodeler.pathbinder.FilterUpdater

All Implemented Interfaces:

Monitorable

public class FilterUpdater
extends DefaultMonitorable

Author:

Jing Ding fcmodeler.pathbinder MetNet

Field Summary

static java.lang.String	locSql
static java.lang.String[]	meshFields
static java.lang.String	taxSql

Fields inherited from class edu.iastate.jtm.gui.DefaultMonitorable

message, monitorable, progress

Constructor Summary

FilterUpdater(MySqlConnector db)
Creates a new instance of Tax2Pmid

Method Summary

void	deleteDuplicate(java.lang.String table)
void	emptyTable(java.lang.String table)
void	updateEntry(java.lang.String id, java.util.List names, boolean tax, boolean exclude0, Limits date)
void	updateFile(java.io.File namefile, boolean cleaned, boolean tax, Limits date)

Methods inherited from class edu.iastate.jtm.gui.DefaultMonitorable

getMessage, getProgress, isDeterministic, isFinished, isMonitorable, isRunning, setMessage, setMonitorable, setProgress

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

taxSql

public static final java.lang.String taxSql

See Also:

Constant Field Values

locSql

public static final java.lang.String locSql

See Also:

Constant Field Values

meshFields

public static final java.lang.String[] meshFields

Constructor Detail

FilterUpdater

public FilterUpdater(MySqlConnector db)
              throws java.io.UnsupportedEncodingException,
                     org.xml.sax.SAXException

Creates a new instance of Tax2Pmid

Throws:

org.xml.sax.SAXException

java.io.UnsupportedEncodingException

Method Detail

updateEntry

public void updateEntry(java.lang.String id,
                        java.util.List names,
                        boolean tax,
                        boolean exclude0,
                        Limits date)
                 throws org.dom4j.DocumentException,
                        java.io.IOException,
                        java.sql.SQLException

Throws:

org.dom4j.DocumentException

java.io.IOException

java.sql.SQLException

updateFile

public void updateFile(java.io.File namefile,
                       boolean cleaned,
                       boolean tax,
                       Limits date)
                throws java.io.IOException,
                       org.dom4j.DocumentException,
                       java.sql.SQLException

Throws:

java.io.IOException

org.dom4j.DocumentException

java.sql.SQLException

deleteDuplicate

public void deleteDuplicate(java.lang.String table)
                     throws java.sql.SQLException

Throws:

java.sql.SQLException

emptyTable

public void emptyTable(java.lang.String table)
                throws java.sql.SQLException

Throws:

java.sql.SQLException