fcmodeler.pathbinder
Class PmidFilter

java.lang.Object
  edu.iastate.jtm.gui.DefaultMonitorable
      fcmodeler.pathbinder.PmidFilter

All Implemented Interfaces:

Monitorable

public class PmidFilter
extends DefaultMonitorable

Take care of creating temporary filter table.

Author:

Jing Ding fcmodeler.pathbinder MetNet

Field Summary

Fields inherited from class edu.iastate.jtm.gui.DefaultMonitorable

message, monitorable, progress

Constructor Summary

PmidFilter(MySqlConnector db)

Method Summary

void	addTaxEntry(FilterEntry newEntry) Add a tax_id to the filter.
void	clearFilter()
void	createPredefinedTable()
java.lang.String	finalTableName()
int	getFilterCount()
boolean	getFilterTaxonomy()
static void	main(java.lang.String[] args)
void	setFilterTaxonomy(boolean f)
int	updateFilterTable(boolean predefined, java.util.Set locations)

Methods inherited from class edu.iastate.jtm.gui.DefaultMonitorable

getMessage, getProgress, isDeterministic, isFinished, isMonitorable, isRunning, setMessage, setMonitorable, setProgress

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PmidFilter

public PmidFilter(MySqlConnector db)
           throws java.sql.SQLException

Throws:

java.sql.SQLException

Method Detail

addTaxEntry

public void addTaxEntry(FilterEntry newEntry)

Add a tax_id to the filter. If a parent of the tax_id is already in the filter, do nothing. If some children are in the filter, remove them.

Parameters:

left - left_id of the tax_id.

right - right_id of the tax_id.

setFilterTaxonomy

public void setFilterTaxonomy(boolean f)

getFilterTaxonomy

public boolean getFilterTaxonomy()

finalTableName

public java.lang.String finalTableName()

getFilterCount

public int getFilterCount()

updateFilterTable

public int updateFilterTable(boolean predefined,
                             java.util.Set locations)
                      throws java.sql.SQLException

Throws:

java.sql.SQLException

clearFilter

public void clearFilter()
                 throws java.sql.SQLException

Throws:

java.sql.SQLException

createPredefinedTable

public void createPredefinedTable()
                           throws java.sql.SQLException

Throws:

java.sql.SQLException

main

public static void main(java.lang.String[] args)